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#1740 From: "hamid201143" <hamid201143@...>
Date: Mon Sep 21, 2009 7:40 am
Subject: Call for Contributions: Special Issue on Self-Adaptive Systems: Models & Algorithms
hamid201143
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C a l l    f o r   C o n t r i b u t i o n s
--------------------------------------------------------------------------------\
---
Special Issue of the ACM Transactions on Autonomous and Adaptive Systems on
Self-Adaptive Systems: Models & Algorithms
--------------------------------------------------------------------------------\
---

--------
Scope
--------
The present special issue is concerned with concepts and techniques which can
rely on metaphors of nature and which are inspired from biological and cognitive
plausibility. Being the basis for many modeling approaches and computational
techniques, this two-fold plausibility offers a very promising foundation for
investigating the adaptivity of intelligent systems that evolve in dynamically
changing environments. The modeling approaches involve a large spectrum of
theories ranging from learning theory to nature inspired optimization
meta-heuristics.

Of particular importance are those approaches that allow for incremental update
of the systems over time. Such approaches are often referred to as sequential or
constructive. Despite the existing literature on adaptivity, the notion of
"incrementally" as a property of self-adaptation, self-organization,
self-monitoring and self-growing has not yet been well studied. This special
issue aims at presenting the latest advances of self-adaptivity with focus on
modeling approaches and computational methods that suit dynamically changing
environments. The special issue is intended for a wide audience including neural
network scientists, mathematicians, physicists, engineers, computer scientists,
biologists, economists and social scientists. The special issue will cover
various topics of self-adaptivity, self-organization, self-monitoring and
self-growing concepts. It also aims at presenting a coherent view of these
issues and a thorough discussion about the future research avenues. A sample of
the targeted topics, which is suggestive rather than exhaustive, includes:

Theories and Algorithms
- Self growing systems
- Adaptation in changing environments
- Online adaptive and life-long learning
- Plasticity and stability of systems
- Incremental adaptive neuro-fuzzy systems
- Incremental and single-pass data mining
- Incremental classification systems
- Incremental clustering
- Concept drift in incremental systems
- Self-monitoring in incremental systems
- Incremental diagnostics
- Novelty detection in incremental learning
- Incremental feature selection and reduction
- Adaptive decision systems
- Principles of self-organization
- Methodologies of self-organization
- Dynamic optimization
- Accommodating adaptation in:
     * Neural networks
     * Evolutionary computation
     * Swarm intelligence
     * Fuzzy systems
Applications: Adaptivity and learning in
- Smart systems
- Ambient / ubiquitous environments
- Distributed intelligence
- Intelligent agent technology
- Robotics
- Industrial applications
- Internet applications
- E-commerce, etc

----------
Schedule
----------
Submission due date: December 15th, 2009
Notification Acceptance: May 15th, 2010
Submission of camera ready version: July 15th., 2010
Publication: Early 2011

------------
Submission
------------
Manuscripts should be submitted to the Special Issue of TAAS on "Self-Adaptive
Systems: Models & Algorithms" following the formatting guidelines of the journal
available at: http://taas.acm.org/ and must be sent to one of the guest editors.
The editors will check whether the submissions are within the scope of the
special issue before they go through the review process.

--------------
Guest Editors
--------------
Hamid Bouchachia, University of Klagenfurt, Austria, hamid@...
Nadia Nedjah, State University of Rio de Janeiro, Brazil, nadia@...

#1739 From: "laszlo.laufer" <lauferl@...>
Date: Fri Feb 13, 2009 9:42 pm
Subject: Complex Systems and Social Simulations Summer School
laszlo.laufer
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COMPLEX SYSTEMS AND SOCIAL SIMULATIONS
SUMMER SCHOOL 2009

Central European University, Budapest, Hungary
JULY 13 - 24, 2009

www.sun.ceu.hu/complex

Application deadline: 5 March, 2009

Course Directors:
Laszlo Gulyas, Collegium Budapest / ELTE, Department of History and
Philosophy of Science, Hungary
Gyorgy Kampis, Collegium Budapest, Focus Group on the Philosophy of
Complexity / ELTE, Department of History and Philosophy of Science,
Hungary

Faculty:
Petra Arhweiler, University of Hamburg / University of Bielefeld,
Faculty of Sociology, Germany
Albert-Laszlo Barabasi, Northeastern University, Department of Physics
/ Center for Cancer Systems Biology, Dana Farber Cancer Institute,
Harvard University, US
Flaminio Squazzoni, (to be confirmed)
Ferenc Jordan, Animal Ecology Research Group of the Hungarian Academy
of Sciences (HAS), Budapest, Hungary
Imre Kondor, Collegium Budapest, Hungary
Scott Page, University of Michigan, Ann Arbor, USA
Klaus G. Troitzsch, University of Koblenz-Landau, Germany
Balazs Vedres, CEU, Center for Network Science, Budapest, Hungary
________________________________________

The summer school is aimed at providing a state-of-the-art cutting-
edge scientific and research-oriented training for junior faculty,
young researchers, postdoctoral fellows, MA and Ph.D. students, and
professionals from European and overseas universities and research
institutes on complex systems and social simulations.

The term Complex Systems (CSS) denotes an interdisciplinary research
methodology currently successful in the social sciences and elsewhere.
CS research originated from physics and nonlinear systems some decades
ago but its models have soon permeated such distant fields as economy,
political science or more recently sociology. As implied by the name,
a CS is essentially a system of many complicated interactions. Complex
Systems methodology has developed sophisticated yet well understood
tools to cope with this challenge. In social systems the essence of CS
is the characterization of the distributed dynamics of how the
interaction of many actors and variables leads to predictable
phenomena, which often involve hierarchy, emergence, dynamic
structures and large scale transitions.

Each day in the course focuses on one tool of this encompassing
methodology. CS methods include various mathematical models (nonlinear
systems, networks, statistical approaches), computer simulations (e.g.
systems dynamics, agent-based modeling). CS simulations are highly
computation intensive and pose problems of supercomputing and
parallelization.

The CSSS course offers lectures, tutorials and discussions on the
whole spectrum of the above. Lectures are from leading experts,
specifically focusing on CS concepts, modeling and (social)
simulation, followed by discussion.

#1738 From: Ted Carmichael <tedsaid@...>
Date: Wed Jan 28, 2009 11:23 pm
Subject: AAAI Fall Symposium: Complex Adaptive Systems and the Threshold Effect
tedsaid21
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Most interesting phenomena in natural and social systems include constant transitions and oscillations among their various phases.  Wars, companies, societies, markets, and humans rarely stay in a stable, predictable state for long.  Randomness, power laws, and human behavior ensure that the future is both unknown and challenging.  How do events unfold?  When do they take hold?  Why do some initial events cause an avalanche while others do not?  What characterizes these events?  What are the thresholds that differentiate a sea change from a non-event?

We are proposing a symposium to explore these and other threshold issues in both the Natural and Social Sciences, using the paradigm of Complex Adaptive Systems.  Hosted by the Association for the Advancement of Artificial Intelligence, this symposium will take place in Arlington, VA, November 5-7, 2009.  

A final determination for approving this event will depend on the amount of interest from the CAS community.   Please see this website for more information; there you will find links to email us if you are interested.  (You don't have to commit at this time.)  Or you can send any questions or comments you have to Ted Carmichael:tedsaid@... ... please put "AAAI_CAS_Symposium" in the subject of your email.

Thanks for you time, and I look forward to hearing from you.

Sincerely,

Ted Carmichael
KDD Lab
College of Computing and Informatics
University of North Carolina in Charlotte

#1737 From: "Ted Carmichael" <tedsaid@...>
Date: Tue Jan 13, 2009 6:49 am
Subject: Re: Re: CAS group
tedsaid21
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Ah, thanks ... you know, I had come across that new site recently, and so I searched for it again, but wasn't able to find it.  Thanks for the link.

-Ted

On Fri, Jan 9, 2009 at 5:10 PM, Jochen Fromm <Jochen.Fromm@...> wrote:

:-) Only a few tumbleweeds are left which tumble
across the site.. I have setup a new blog here:
http://blog.cas-group.net/
A wordpress blog offers better functionality
for embedding pictures and videos, and the
Yahoo! groups have improved very little over
the years. After all the embarrassing operations
of Yahoo! in the last months I thought it is
maybe time to try something else..
As you see, this group is still open for
discussions, though.

-J.


--- In CAS-Group@yahoogroups.com, "tedsaid21" <tedsaid@...> wrote:
>
> Hey ... what's going on with the group?  Did everyone move and not
> tell me?  The last message is dated Oct. 14th.
>
> (Sheesh ... can't a guy skip a month or two without getting left out.)
>
> cheers,
>
> Ted
>



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#1736 From: "Jochen Fromm" <Jochen.Fromm@...>
Date: Fri Jan 9, 2009 10:10 pm
Subject: Re: CAS group
einstein702000
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:-) Only a few tumbleweeds are left which tumble
across the site.. I have setup a new blog here:
http://blog.cas-group.net/
A wordpress blog offers better functionality
for embedding pictures and videos, and the
Yahoo! groups have improved very little over
the years. After all the embarrassing operations
of Yahoo! in the last months I thought it is
maybe time to try something else..
As you see, this group is still open for
discussions, though.

-J.


--- In CAS-Group@yahoogroups.com, "tedsaid21" <tedsaid@...> wrote:
>
> Hey ... what's going on with the group?  Did everyone move and not
> tell me?  The last message is dated Oct. 14th.
>
> (Sheesh ... can't a guy skip a month or two without getting left out.)
>
> cheers,
>
> Ted
>

#1735 From: "tedsaid21" <tedsaid@...>
Date: Fri Jan 9, 2009 9:41 am
Subject: CAS group
tedsaid21
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Hey ... what's going on with the group?  Did everyone move and not
tell me?  The last message is dated Oct. 14th.

(Sheesh ... can't a guy skip a month or two without getting left out.)

cheers,

Ted

#1734 From: "daphne.blanc" <daphne.blanc@...>
Date: Wed Jan 7, 2009 9:31 am
Subject: CASoN 2009: International Conference on Computational Aspects of Social Networks
daphne.blanc
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I would like to inform you that CASoN 2009 Conference will take place
in June from the 24th to the 27th in Fontainebleau, France. It is a
conference technically sponsorded by IEEE with the cooperation of ACM
SIGAPP. The official website of the conference can be view on the
following address: http://www.mirlabs.org/cason09/

#1733 From: "magd45" <magd45@...>
Date: Mon Oct 13, 2008 12:21 am
Subject: Re: Complex systems are the most frequent systems we can find?
magd45
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I believe that almost every biological, social and economic system is
a complex system. Hence they are ubiquitous.
E.Ahmed

--- In CAS-Group@yahoogroups.com, "Jochen Fromm" <Jochen.Fromm@...>
wrote:
>
>
> Determining the fractal dimension of an image is not
> difficult, you can use for example the box counting method.
> In complex networks, often the degree distribution is
> used to characterize a network (the degree of a node
> in a network is the number of connections it has to
> other nodes). A scale-free network is for example a
> network whose degree distribution follows a power law.
>
> -J.
>
> --- In CAS-Group@yahoogroups.com, "michael_mckosky" <mmckosky@>
wrote:
> >
> > Jochen,
> > (I will try to respond again, sorry if the first attempt got to
you)
> > I was hoping to see something having to do with the
dimensionality of
> > complexity.
> > I had in mind the method used to identify/confirm the work of
Jackson
> > Pollack, were his work had a characteristic fractional dimension,
and
> > his imitators had a lower dimension.
> > I also visualized the connection graphs of the Internet web
sites. It
> > seems to me that some sort of dimensional measure could be taken
to
> > give an idea of complexity, related not only to the number of
parts but
> > to the connections amongst the parts.
> > Mike
> >
>

#1732 From: "Jochen Fromm" <Jochen.Fromm@...>
Date: Sun Oct 12, 2008 6:40 pm
Subject: Re: Complex systems are the most frequent systems we can find?
einstein702000
Offline Offline
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Determining the fractal dimension of an image is not
difficult, you can use for example the box counting method.
In complex networks, often the degree distribution is
used to characterize a network (the degree of a node
in a network is the number of connections it has to
other nodes). A scale-free network is for example a
network whose degree distribution follows a power law.

-J.

--- In CAS-Group@yahoogroups.com, "michael_mckosky" <mmckosky@...> wrote:
>
> Jochen,
> (I will try to respond again, sorry if the first attempt got to you)
> I was hoping to see something having to do with the dimensionality of
> complexity.
> I had in mind the method used to identify/confirm the work of Jackson
> Pollack, were his work had a characteristic fractional dimension, and
> his imitators had a lower dimension.
> I also visualized the connection graphs of the Internet web sites. It
> seems to me that some sort of dimensional measure could be taken to
> give an idea of complexity, related not only to the number of parts but
> to the connections amongst the parts.
> Mike
>

#1731 From: "michael_mckosky" <mmckosky@...>
Date: Fri Oct 10, 2008 12:11 am
Subject: Re: Complex systems are the most frequent systems we can find?
michael_mckosky
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Jochen,
(I will try to respond again, sorry if the first attempt got to you)
I was hoping to see something having to do with the dimensionality of
complexity.
I had in mind the method used to identify/confirm the work of Jackson
Pollack, were his work had a characteristic fractional dimension, and
his imitators had a lower dimension.
I also visualized the connection graphs of the Internet web sites. It
seems to me that some sort of dimensional measure could be taken to
give an idea of complexity, related not only to the number of parts but
to the connections amongst the parts.
Mike

#1730 From: "Telmo Menezes" <telmo@...>
Date: Fri Oct 10, 2008 10:27 am
Subject: Re: Re: Complex systems are the most frequent systems we can find?
telmo_menezes
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I agree, it depends how you look at it. It's all in a human mind. Give
me any system that you can think of and I bet that someone is capable
of creating a classical model of it and a complex model of it.
Sometimes the classical approximation works best, sometimes the
complex one works best. But that is tied to human purpose: what is the
model *for*.

Cheers,
Telmo.

On Thu, Oct 9, 2008 at 8:41 PM, Jochen Fromm <Jochen.Fromm@...> wrote:
> Are complex systems the most frequent systems
> we can find? It depends where you look at. On
> a very large scale, the Italian researcher is correct.
> If you consider the entire galaxy or universe,
> then the systems by which we are surrounded in daily
> life are very complex systems. Entropy increases
> everywhere, only in small pockets we can find
> exceptions. The earth can be regarded as such
> an exception, like an island in a variety
> of simple systems.
>
> On the earth itself one can find complex systems
> everywhere - especially at places where life is.
> Complexity can be found everywhere where evolution
> is at work,
>
> * in all living organisms which are subject
> to evolution
>
> * in all evolving complex adaptive systems which
> have a long historical background
>
> * in software development, esp. where systems have
> grown over a long period of time
>
> Designed systems can be complex, too, but more often
> "complicated" is a better description. Complicated
> systems are like machines, they are designed with
> a certain purpose, every part as a certain function,
> and one key defect (in one of the many critical parts)
> brings the entire system to a halt.
>
> -J.
>
> --- In CAS-Group@yahoogroups.com, "gaia" <gaia.scagnetti@...> wrote:
>>
>> Dear all,
>> I have wrote this question to another group about complexity
>> but i would like to have your opinion/help on this issue:
>>
>> I'm writing my PhD thesis in Communication Design for complex
>> systems social integration. In the second chapter I quote this
>> sentence from an Italian researcher on complexity (I made
>> a quick translation):
>> "If you consider all the systems by which we are surrounded, the
>> complex systems are regarded as exceptions, like islands in a
>> variety of simple or complicated systems." It sounded a good
>> point to me, as I'm very tired of everyone saying that
>> everything is complex and I was trying to take some clear
>> position in saying which characteristics a system should have
>> to be considered as complex.
>> But Yesterday I had a long discussion about it with another
>> researcher; he thought that if we look at the world at least
>> everything is complex, or, in other words, that complex systems
>> are more frequent than the simple/complicated ones.
>> My position was that is different to say what is complex as an
>> adjective and what is a complex system as a particular kind of
>> system. And that I do think that the most of our world is
>> complex but when I talk about complex system I refer to such
>> kind of systems that has specific characteristics (high number
>> of elements, connections, non linearity, feedback and loop,
>> etc etc).
>> He answer that the sun-earth-moon system is complex even if
>> it doesn't have a high number of elements.
>>
>> As all the researchers, I'm never sure of anything and now
>> I'm in doubt. What do you think about it?
>> Complex systems are the islands in a variety of simple
>> or complicated systems, or are the most frequent systems we
>> can find?
>>
>> Gaia
>>
>
>

#1729 From: Rafe Furst <rafe@...>
Date: Fri Oct 10, 2008 4:30 am
Subject: Re: Complex systems are the most frequent systems we can find?
rafe_furst
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My personal opinion is that everything in the actual universe is a complex system but that many such systems are approximated well with simpler models and thus we are fooled into believing that the system itself is not complex.  The portion of those that "appear" complex to us vs. those that do not depends on the individual's willingness to take off their blinders.

--Rafe


On Oct 9, 2008, at 6:55 PM, "gaia" <gaia.scagnetti@...> wrote:

Dear all,
I have wrote this question to another group about complexity
but i would like to have your opinion/help on this issue:

I'm writing my PhD thesis in Communication Design for complex systems
social integration.
In the second chapter I quote this sentence from an Italian researcher
on complexity (I made a quick translation):
"If you consider all the systems by which we are surrounded, the
complex systems are regarded as exceptions, like islands in a variety
of simple or complicated systems." It sounded a good point to me, as
I'm very tired of everyone saying that everything is complex and I was
trying to take some clear position in saying which characteristics a
system should have to be considered as complex.
But Yesterday I had a long discussion about it with another
researcher; he thought that if we look at the world at least
everything is complex, or, in other words, that complex systems are
more frequent than the simple/complicated ones.
My position was that is different to say what is complex as an
adjective and what is a complex system as a particular kind of system.
And that I do think that the most of our world is complex but when I
talk about complex system I refer to such kind of systems that has
specific characteristics (high number of elements, connections, non
linearity, feedback and loop, etc etc).
He answer that the sun-earth-moon system is complex even if it doesn't
have a high number of elements.

As all the researchers, I'm never sure of anything and now I'm in doubt.

What do you think about it?
Complex systems are the islands in a variety of simple or complicated
systems, or are the most frequent systems we can find?

Gaia


#1728 From: "Jochen Fromm" <Jochen.Fromm@...>
Date: Thu Oct 9, 2008 7:41 pm
Subject: Re: Complex systems are the most frequent systems we can find?
einstein702000
Offline Offline
Send Email Send Email
 
Are complex systems the most frequent systems
we can find? It depends where you look at. On
a very large scale, the Italian researcher is correct.
If you consider the entire galaxy or universe,
then the systems by which we are surrounded in daily
life are very complex systems. Entropy increases
everywhere, only in small pockets we can find
exceptions. The earth can be regarded as such
an exception, like an island in a variety
of simple systems.

On the earth itself one can find complex systems
everywhere - especially at places where life is.
Complexity can be found everywhere where evolution
is at work,

* in all living organisms which are subject
   to evolution

* in all evolving complex adaptive systems which
   have a long historical background

* in software development, esp. where systems have
   grown over a long period of time

Designed systems can be complex, too, but more often
"complicated" is a better description. Complicated
systems are like machines, they are designed with
a certain purpose, every part as a certain function,
and one key defect (in one of the many critical parts)
brings the entire system to a halt.

-J.


--- In CAS-Group@yahoogroups.com, "gaia" <gaia.scagnetti@...> wrote:
>
> Dear all,
> I have wrote this question to another group about complexity
> but i would like to have your opinion/help on this issue:
>
> I'm writing my PhD thesis in Communication Design for complex
> systems social integration.  In the second chapter I quote this
> sentence from an Italian researcher on complexity (I made
> a quick translation):
> "If you consider all the systems by which we are surrounded, the
> complex systems are regarded as exceptions, like islands in a
> variety of simple or complicated systems." It sounded a good
> point to me, as I'm very tired of everyone saying that
> everything is complex and I was trying to take some clear
> position in saying which characteristics a system should have
> to be considered as complex.
> But Yesterday I had a long discussion about it with another
> researcher; he thought that if we look at the world at least
> everything is complex, or, in other words, that complex systems
> are more frequent than the simple/complicated ones.
> My position was that is different to say what is complex as an
> adjective and what is a complex system as a particular kind of
> system. And that I do think that the most of our world is
> complex but when I talk about complex system I refer to such
> kind of systems that has specific characteristics (high number
> of elements, connections, non linearity, feedback and loop,
> etc etc).
> He answer that the sun-earth-moon system is complex even if
> it doesn't have a high number of elements.
>
> As all the researchers, I'm never sure of anything and now
> I'm in doubt. What do you think about it?
> Complex systems are the islands in a variety of simple
> or complicated systems, or are the most frequent systems we
> can find?
>
> Gaia
>

#1727 From: "gaia" <gaia.scagnetti@...>
Date: Thu Oct 9, 2008 3:55 pm
Subject: Complex systems are the most frequent systems we can find?
gaiadotsca
Offline Offline
Send Email Send Email
 
Dear all,
I have wrote this question to another group about complexity
but i would like to have your opinion/help on this issue:

I'm writing my PhD thesis in Communication Design for complex systems
social integration.
In the second chapter I quote this sentence from an Italian researcher
on complexity (I made a quick translation):
"If you consider all the systems by which we are surrounded, the
complex systems are regarded as exceptions, like islands in a variety
of simple or complicated systems." It sounded a good point to me, as
I'm very tired of everyone saying that everything is complex and I was
trying to take some clear position in saying which characteristics a
system should have to be considered as complex.
But Yesterday I had a long discussion about it with another
researcher; he thought that if we look at the world at least
everything is complex, or, in other words, that complex systems are
more frequent than the simple/complicated ones.
My position was that is different to say what is complex as an
adjective and what is a complex system as a particular kind of system.
And that I do think that the most of our world is complex but when I
talk about complex system I refer to such kind of systems that has
specific characteristics (high number of elements, connections, non
linearity, feedback and loop, etc etc).
He answer that the sun-earth-moon system is complex even if it doesn't
have a high number of elements.

As all the researchers, I'm never sure of anything and now I'm in doubt.

What do you think about it?
Complex systems are the islands in a variety of simple or complicated
systems, or are the most frequent systems we can find?

Gaia

#1726 From: "Jochen Fromm" <Jochen.Fromm@...>
Date: Thu Sep 11, 2008 9:02 pm
Subject: Re: Molecular building blocks
einstein702000
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An interesting article, but unfortunately
I don't think it is possible. The illustration
in the article shows the 20 amino acids
used to make proteins and the eight nucleic acids
used to code DNA and RNA (although there are
only 4 basic ones: Adenosine, Guanosine, Uridine,
and Cytidine). This is all well known. The question
remains what the functions of all the possible
genes and proteins are.

Yet the "glycome" as a set of Glycans similar to
the genome (set of genes) and proteome (set of
proteins) is interesting and new.

Obviously animals have a strong desire to
get as much sugar and fat as they can. These
are the things that taste well, and they are the
things we are made off: glycans/sugars are used
for the structure inside the cell, lipids/fat
for the structures outside the cell - the cell
membranes.

While genes are used to encode how the body is
built, sugar and fat are actually building it.
Sugar also seems to be a kind of fuel for the
body - it is the main energy source. The function
of fat includes energy storage and providing
structure.

I have doubts about the promise the article makes
(that these cellular components – the glycans and
lipids – may now hold the keys to uncovering the
origins of many grievous diseases that continue
to evade understanding). I don't think that
the origin of many serious diseases (for instance
cancer) is a single mysterious molecule that
hasn't been identified yet. Even if there are
only 68 molecular building blocks used to construct
the fundamental components of cells, there are
endless possibilities how one can arrange these
building blocks.

-J.

--- In CAS-Group@yahoogroups.com, "Telmo Menezes" wrote:
>
> Could a computer scientists examine these 68 molecules and try to
> extract from their interactions the "juice" of complexity?
>
> Cheers,
> Telmo Menezes.
>
> ----------
>
> Do 68 Molecules Hold the Key to Understanding Disease?
>
> "These 68 building blocks provide the structural basis for the
> molecular choreography that constitutes the entire life of a cell,"
> said Marth. "And two of the four cellular components are produced by
> these molecular building blocks in processes that cannot be encoded by
> the genes. These cellular components – the glycans and lipids – may
> now hold the keys to uncovering the origins of many grievous diseases
> that continue to evade understanding."
>
> From:
> http://ucsdnews.ucsd.edu/newsrel/health/09-0868Molecules.asp
>

#1725 From: "Telmo Menezes" <telmo@...>
Date: Tue Sep 9, 2008 8:18 am
Subject: Molecular building blocks
telmo_menezes
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Could a computer scientists examine these 68 molecules and try to
extract from their interactions the "juice" of complexity?

Cheers,
Telmo Menezes.

----------

Do 68 Molecules Hold the Key to Understanding Disease?

"These 68 building blocks provide the structural basis for the
molecular choreography that constitutes the entire life of a cell,"
said Marth. "And two of the four cellular components are produced by
these molecular building blocks in processes that cannot be encoded by
the genes. These cellular components – the glycans and lipids – may
now hold the keys to uncovering the origins of many grievous diseases
that continue to evade understanding."

From:
http://ucsdnews.ucsd.edu/newsrel/health/09-0868Molecules.asp

#1724 From: Rafe Furst <rafe@...>
Date: Mon Sep 8, 2008 7:45 pm
Subject: Re: Microsoft Datacenters
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Kevin Kelly of Wired gave an interesting talk on this subject.  For a more speculative, but believable projection slightly farther out I recommend Vernor Vinge's "Rainbows End".

Personally, these visions rings true.  On a small scale, I've noticed an incremental "smartening" of Google searches over the years, just by virtue of a much richer, more complete database (not that it ever becomes complete in some actual sense).  For instance, you can now type natural language questions (e.g. "What is the price of tea in China?") and expect to get a reasonable response.  No longer do you have to construct or program your queries so specifically to match a computer-friendly format.  My own vision of how the web can grow explicitly (and incrementally) smarter is by extending the search operator with more semantics.

The idea of constant connection touched on by Kelly and imagined in great detail by Vinge is also beginning to come true.  To wit, Facebook's mini-feed as the new and personalized zeitgeist, and the utility of the iPhone for just about everything, especially as one travels away from their home base.



On Aug 17, 2008, at 6:56 AM, Jochen Fromm wrote:

Google is famous for its large-scale datacenters.
How many servers does Microsoft actually have?
A Microsoft video accidentally revealed the numbers,
they have about 15 datacenters hosting nearly 
150,000 servers, compared to 130,000 servers last 
year. They have around 70,000 servers only for 
search, and 20,000 servers for Hotmail.. 
Whow, 150,000 servers.. 

I bet the numbers from Google are similar.
What could you do with 150,000 servers? How many
severs and datacenters do you need to cross the 
complexity threshold for a new kind of AI? 

http://www.istartedsomething.com/20080812/microsoft-enviroment-video-reveals-server-numbers-power/

__.


#1723 From: "Jochen Fromm" <Jochen.Fromm@...>
Date: Fri Sep 5, 2008 9:15 pm
Subject: Blog Bifurcation
einstein702000
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I have created two new blogs:

4 Lines of Code
http://4loc.wordpress.com/

CAS-Group Blog
http://blog.cas-group.net/

The first is a personal blog about software development
and Ruby on Rails - what I am doing as my day job.

The second is a blog about complex adaptive systems,
just like this group. There is also a new wiki at
http://www.cas-group.net/wiki/

Although finally some interesting discussions have
take place, I plan to abandon the Yahoo group in the
long term, and this is the first step to do it.
I will post mainly in the blogs and less in this
group, let me now if you want to be become a
contributor or co-author.

-J.

#1722 From: "Izzet Pembeci" <pembeci@...>
Date: Tue Sep 2, 2008 7:29 am
Subject: Re: Re: Great mysteries
pembeci3
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I would suggest using a Content Management System (CMS) for such a site. Yes, you can write it if you put your mind to it but it still will be a lot of work. If you use a CMS instead you can have your site up and running very quickly and use your time to fill it with content and other customizations. It will be much more secure and you can extend it with other written modules later.

There are a lot of CMS to choose from:

http://www.cmsmatrix.org/

Personally my favourite is Drupal:

http://drupal.org/
http://buytaert.net/tag/drupal-sites (a list of sites that shows what Drupal can achieve)

Drupal may be harder to learn initially compared to others but once you get used to its terminology and how to achieve things, it is much more powerful than the other ones. If you only need basic blogging WordPress will do but its taxonomy (tagging) system is not as powerful as Drupal and social networking does not exist AFAIK.

iZzET

On Wed, Aug 27, 2008 at 10:26 PM, Jochen Fromm <Jochen.Fromm@...> wrote:
I am not sure, actually it is quite simple to
write a community site such as Yahoo Groups. Using
modern scripting languages (Ruby or Python), together
with a suitable framework (Ruby on Rails or Django),
you can do this in a few days or weeks. I have something
as Yahoo groups itself in mind, only for complex systems
and with more social network functions (for example
friendships to see what you friends are doing, and
of course tagging and rating functionality, etc.).

-J.

>
> Jochen, I think this is a good idea and I think I'd like to
> participate, but I'll admit I don't know exactly what you are
> intending and how it differs from this forum :-)
>




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#1721 From: Keith Eric Grant <keg@...>
Date: Sat Aug 30, 2008 4:39 pm
Subject: Re: Creative Destruction
ramblemuse
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Jochen Fromm wrote:
> Buzzword of the day: "Creative Destruction", meaning
> one thing is replaced by another from within. Sounds
> a bit like cancer..
>

The late military strategist John Boyd wrote a white paper titled "Creation
and Destruction" as a process of analysis (taking things apart) and
re-synthesis (putting things together in new ways) as a necessary part of
adapting to an uncertain and changing world.

<http://www.chetrichards.com/modern_business_strategy/boyd/destruction/destructi\
on_and_creation.htm>

Chuck Spinney, one of Boyd's proteges, later put together a set of
interpretive pages.

http://www.chetrichards.com/modern_business_strategy/spinney/ev_epis/evolutionar\
y_1.htm

Chet Richards, another Boyd colleague/protege hosts the website
(http://www.chetrichards.com/c2w/) that the two papers above are on. He
wrote a recent book on application of Boyd's concepts titled "Certain to
Win". Frans Osinga, in "Science, Strategy and War" goes more deeply into the
numerous and various sources Boyd used (There's also a bibliography linked
to the first paper above). Osinga's book is best available directly from the
publisher. It's an interesting read.
(http://routledgehistory.com/books/Science-Strategy-and-War-isbn9780415459525)

One might think of the concept as being more like creative scavenging then
like cancer. Or as dismantling existing structures that are losing
effectiveness to recycle the resources in an adaptive manner.

Of course, a lot of what's written is going to simply reflect off the
surface veneer and miss the depth's.

...Keith

--

-----------------------------------------------------
    Keith Eric Grant
    Freelance Physicist, Writer, & Massage Instructor
    keg@...

    Ramblemuse Associates
    Pleasanton, CA 94566

    http://www.ramblemuse.com/
    http://www.ramblemuse.com/newdesign/resume.html
    http://www.linkedin.com/in/ramblemuse
-----------------------------------------------------

#1720 From: Rafe Furst <rafe@...>
Date: Sat Aug 30, 2008 1:47 am
Subject: Re: Social networks for scientists
rafe_furst
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I'll bet on Nature Network.  It's the only one I've stumbled across and know people who are on.  Plus, people want the cache associated with the journal Nature.

That said, I think there's an opportunity to penetrate this space because nobody is doing it well at all from what I can tell.  How about providing tools and apps that scientists would care about rather than standard social networking.  

Personally, I'd love great visualization tools and a way to connect with graphic artists who are good at visualizing scientific concepts, maybe having some sort of exchange or other incentive system built in to facilitate collaboration.  Or a new scientific journal where any site user can submit a paper anonymously and the wisdom of crowds rates it, Digg-style, but with the top 10 each month getting published in a print format for sale and advertising revenue.  The possibilities are endless.

--Rafe


On Aug 28, 2008, at 12:08 PM, Jochen Fromm wrote:


Which of the following social networks 
will become a Facebook for scientists?

Nature Network 
http://network.nature.com/

SciLink 
http://www.scilink.com/

ResearchGATE 
https://www.researchgate.net/

SciBog 
http://scientists.scibog.com/



#1719 From: "Jochen Fromm" <Jochen.Fromm@...>
Date: Thu Aug 28, 2008 7:08 pm
Subject: Social networks for scientists
einstein702000
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Which of the following social networks
will become a Facebook for scientists?

Nature Network
http://network.nature.com/

SciLink
http://www.scilink.com/

ResearchGATE
https://www.researchgate.net/

SciBog
http://scientists.scibog.com/

#1718 From: "Jochen Fromm" <Jochen.Fromm@...>
Date: Wed Aug 27, 2008 8:03 pm
Subject: Creative Destruction
einstein702000
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Buzzword of the day: "Creative Destruction", meaning
one thing is replaced by another from within. Sounds
a bit like cancer..

Definitions for "creative Destruction":
"a process which revolutionizes the structure of a
system from within, incessantly destroying the old
one, while incessantly creating a new one"
http://www.investopedia.com/terms/c/creativedestruction.asp

"a process of industrial transformation that
accompanies radical innovation"
http://www.telecom-marketing.com/index.php?q=node/7

#1717 From: "Jochen Fromm" <Jochen.Fromm@...>
Date: Wed Aug 27, 2008 7:55 pm
Subject: Inconceivable complexity
einstein702000
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Richard Feynman on "Social Sciences"
http://www.youtube.com/watch?v=_EZcpTTjjXY

Feynman on the "Inconceivable complexity of nature"
http://www.youtube.com/watch?v=AU8PId_6xec

#1716 From: "Jochen Fromm" <Jochen.Fromm@...>
Date: Wed Aug 27, 2008 7:26 pm
Subject: Re: Great mysteries
einstein702000
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I am not sure, actually it is quite simple to
write a community site such as Yahoo Groups. Using
modern scripting languages (Ruby or Python), together
with a suitable framework (Ruby on Rails or Django),
you can do this in a few days or weeks. I have something
as Yahoo groups itself in mind, only for complex systems
and with more social network functions (for example
friendships to see what you friends are doing, and
of course tagging and rating functionality, etc.).

-J.

>
> Jochen, I think this is a good idea and I think I'd like to
> participate, but I'll admit I don't know exactly what you are
> intending and how it differs from this forum :-)
>

#1715 From: "Jochen Fromm" <Jochen.Fromm@...>
Date: Wed Aug 27, 2008 7:10 pm
Subject: Major evolutionary apdative changes
einstein702000
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A major evolutionary transition is for Kevin Padian
for example the transition from fins to legs. This is
not a major evolutionary transition (a 'landmark transition')
in the sense of Eörs Szathmáry and John Maynard Smith, see
http://www.nature.com/nature/focus/maynardsmith/pdf/1995.pdf
It is just a major evolutionary apdative change, yet
nevertheless interesting:

"We have the data that substantiate the major changes
in evolutionâ€"from the origin of jaws and bones
to the emergence of vertebrates on land, from the
radiation of dinosaurs to the origin of birds and
flight, from the assembly of the myriad features of
jaws, ears, brains, and teeth in ancient mammalian
relatives to the radiation of placentals and marsupials
over the past 70 million years."

Trickle-down evolution: an approach to getting major
evolutionary adaptive changes into textbooks and curricula
Padian Integr. Comp. Biol. 48 (2008) 175-188
http://radar.oreilly.com/trickle-down%20evolution-4.pdf

-J.

#1714 From: Rafe Furst <rafe@...>
Date: Mon Aug 25, 2008 8:27 pm
Subject: Re: Re: Great mysteries
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Regarding invented/artificial problems vs "natural" ones...

I think I do understand what Jochen means when he says P vs NP is
invented whereas "intelligence" is a true mystery.  But I also agree
with Telmo in questioning this distinction.  Ultimately, when we are
analyzing any sort of system, we do so using imperfect, artificial
models of the system which we hope capture the essence of what's
important.

In the case of intelligence, I do think it's questionable (as I've
stated in a previous reply) that we have even an adequate model of
what it is; perhaps our model of intelligence is so far from
corresponding to anything in the underlying system(s) in questions
that we should back off and start with a different sort of model.

In the case of P v NP, there is the compounded problem that the
underlying system that it models is a model that we invented (i.e. the
system of computable functions).  And we would be right to question
how well that underlying model/system corresponds to things that we
believe exist in the universe.

Just to illustrate this last and subtle point, a very smart friend of
mine recently point out that in the actual universe there are no known
examples of a perfect circle.  Yet we take it for granted that perfect
circles exist and that reasoning we do with the model of perfect
circles then carries over to objects we find in the real world.

#1713 From: Rafe Furst <rafe@...>
Date: Mon Aug 25, 2008 8:05 pm
Subject: Re: Re: Great mysteries
rafe_furst
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Jochen, I think this is a good idea and I think I'd like to participate, but I'll admit I don't know exactly what you are intending and how it differs from this forum :-)


On Aug 22, 2008, at 1:15 PM, Jochen Fromm wrote:

At the moment I'm thinking about setting up my own 
set of websites, maybe some combination of standard 
programs (a wordpress blog, a media wiki, ..) or 
a site written by myself. What do you think of 
cas-group.net? 


#1712 From: Rafe Furst <rafe@...>
Date: Mon Aug 25, 2008 7:42 pm
Subject: Re: Upgrade for the Brain
rafe_furst
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Sorry for the late reply here.

Regarding the threads on human intelligence we humans often don't have
a clue as to what really goes on in our minds.  We tend to think that
most of what happens during our waking hours is some form of
conscious, analytical reasoning, when in fact mostly it's pattern
recognition, and subconscious spreading activation.  The small
minority of activity that could be considered symbolic reasoning
(either linguistic, spatial or otherwise) is far from sophisticated
and often quite faulty (c.f. vast literature on cognitive biases).
Compounding matters further, we seem much better at post hoc
rationalization than we are at open-ended and open-minded rational
analysis, which leads to a false sense that we are very good at
reasoning.

None of this is intended to indict humans as a whole or anyone in
particular, just that if we want to understand better why animals
can't "think" and what it will take to create AI that's got the
"juice", we need to understand -- and be realistic about -- what we
are comparing animals and putative AI to.

#1711 From: "Jochen Fromm" <Jochen.Fromm@...>
Date: Fri Aug 22, 2008 8:15 pm
Subject: Pinker meets Colbert
einstein702000
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