Is there a good reason to have this CD/CD1 conversion when reading a PDB file? All it takes, in my understanding, to avoid this is to modify the protein.top...
dear friends, Is there a good reason to have this CD/CD1 conversion when reading a PDB file? All it takes, in my understanding, to avoid this is to modify the ...
in the tutorial, the section "enantiomorph ambiguity" groups the 22 enantiomorphic space groups into 11 pairs, each pair related by a center of inversion. in...
Dear CNS BB, We are trying to install CNS on linux-based ubuntu8.10 platform. while trying to install CNS, we are asked to install compiler. When we tried to...
1815
Axel Brunger
brunger@...
May 28, 2009 2:31 pm
Use the pre-compiled linux binaries that are available from the CNS download site. Axel Brunger ... Axel T. Brunger Investigator, Howard Hughes Medical...
Dear cnsbb, How to use pre-compiled linux(32-bit; with bash shell) binaries to get the compilers to work in CNS ver 1.21. Please see below the complete process...
1817
Axel Brunger
brunger@...
Jun 1, 2009 2:45 pm
Don't run the install script for the precompiled version as as explicitly stated in the download instructions and in the Installation instructions on the CNS...
Dear cnsbb, after editing the cns_solve_env file as follows: setenv CNS_SOLVE '/softwares/cns/cns_solve_1.21' setenv CNS_SOLVE $CNS_SOLVE didnot run the...
1819
Justin Lecher
j.lecher@...
Jun 2, 2009 12:06 pm
... setenv is specific for csh or tcsh. You have to use export at bash: export CNS_SOLVE='/softwares/cns/cns_solve_1.21' justin -- Justin Lecher Institute for...
Dear All, I have been doing calculations with Haddock that uses CNS. But I get the series of error messages below when the program reads generate.inp. The...
Hi Roberto, Check if you forgot a " in your input file. Cheers, christian ... _______________________________________________________________________ Dr....
Hello, I am trying to install some CNS Solve 1.2 for a fellow researcher and have run into a compile problem. `uname -a` is: Linux uridine 2.6.9-5.ELsmp #1 SMP...
1825
Julie Fisher
j.fisher@...
Jun 15, 2009 3:17 pm
Dear All, Have any of you used cns-solve with a spacer-9 system connecting two DNA strands? The spacer-9 system is supplied as a phosphoramidite as shown; ...
Dear cnsbb,    I meet two problems in Distance restraints and Dihedral angle restraints when running CNS.   %NOESET-ERR: error in selection - no atoms...
1827
Lukacs, Christine
christine.lukacs@...
Jun 17, 2009 6:33 pm
Hi- I have a bromine in my ligand, and it always refines with a much higher b-factor than the rest of the ligand, and correspondingly, a bunch of negative...
Hi All, I am trying to install CNS_solve_1.2 on my suse11.1 linux I have configure CNS But when i type the command of : make install i m not able to install I...
1829
sylvie nonin-lecomte
sylvie.nonin@...
Jul 10, 2009 9:13 am
Hi all, I have downloaded the precompiled version of cnssolve 1.21 for mac intel. I have a macbookpro with an intel core 2 duo running on osx 10.5.7. I have...
1830
sylvie nonin-lecomte
sylvie.nonin@...
Jul 10, 2009 1:34 pm
Hi all, we have solved the problem. In the cns_solve_env file, I removed the line : if ( ! $?CNS_ARCH ) setenv CNS_ARCH '$CNS_SOLVE/bin/getarch' and replaced...
Dear ALL: Â Â Â Â I got a problem to run density modification in CNS. Â Â Â Â Â Would you give me some troubleshooting? Â Â Â Â Â Â Â The following is what...
It's impossible to say what exactly went wrong - please post the define() part of your density_modify.inp - apparently one or more selections are malformed. ...
1834
Xie Jiabao
xie.jiabao@...
Aug 3, 2009 5:39 am
Dear all, I am trying to carry out simulated annealing, energy minimization and Bfactor refinement of my model using refine.inp in cns1.21. The protein model...
1835
Axel Brunger
brunger@...
Aug 3, 2009 1:37 pm
Please try one of the pre-compiled CNS binaries for linux or Mac OS X. The fact that the program is stuck without error message may be due to some compiler ...
Is it stuck or it just quits (try "ps -Af | grep cns_solve" to see if cns_solve is still running). If it quits, it may be related to the stacksize limitation,...
1837
Jack Tanner
tannerjj@...
Aug 3, 2009 3:15 pm
I wanted to let everyone know that there appears to be a typo in difference_distance.inp for v1.1 and v1.2. The following lines evaluate...
1838
Axel Brunger
brunger@...
Aug 3, 2009 3:23 pm
Thanks! I'll fix this in the next release. Axel Brunger ... Axel T. Brunger Investigator, Howard Hughes Medical Institute Professor of Molecular and Cellular...
Hello  I am a research scholar but i dont have academic ID and i want to install the CNS suite to my system, how can i get the license in absence of academic...
Dear all, I'm facing problem in model_stats step . I 'm working with protein kinase what is the format that we need to give in cns/inputs edit+help, what are...
