... Maps calculated by different programs will never be exactly identical. Refmac does not calculate a "simple Fo map", afaik. Phenix has a script to...
... No, composite omit map will automatically exclude regions from map calculation. I may have actually confused recently the composite map and sa_omit map...
Hi all I am trying to use cns for space group I2, know it is equivalent to C2 but beta is close to 104 for I2 and 130 for C2. I saw the space group library for...
You are invited to apply for a brain pool scientist position in the field of structural biology under Professor Kyung Hyun Kim of Korea University. The...
hi I ran annealing and minimization using cns-1.3 for my low resolution data. After annealing or minimization, I have seen positive and negative density...
Hi All,Firstly, sincere apologies if this question has been asked and answered before, but I am looking for some clarification. I have recently acquired a Mac,...
Hi All,As a follow-up, I forgot to mention in my previous email message on this subject that I have also attempted to compile cns_solve 1.21, with aria 2.3...
Hi all, Thanks to everybody who has contributed over the past couple of days on the various bulletin boards I have posted to. As is always the case, the...
1940
Gerard DVD Kleywegt
gerard@...
Jun 16, 2010 4:50 pm
The Protein Data Bank in Europe has *three* openings for software engineers or scientific programmers (one-year contracts): (1) The PDBe Team has an opening...
Dear experts I have two NMR structures of a same protein, in position 50, one with a Lysine (protein X) and the other with Acetylated Lysine (protein Y). I...
Hi, Did you generate the topology and parameter files for the acetylated lysine ? It's not clear from your message. If not, you should go to the prodrg site: ...
1943
Gerard DVD Kleywegt
gerard@...
Jul 1, 2010 12:49 pm
PDBe launches its redesigned website (pdbe.org) ... The Protein Data Bank in Europe (PDBe; http://pdbe.org) has launched its redesigned website with lots of...
Hi, I have the some problem about creating two DNA sequence. I want to generate the sequece of DNA duplex. And then create the extended structure. Finally use...
Why don't you try generating duplex DNA in coot and then reading it into CNS? ... -- Edwin Pozharski, PhD, Assistant Professor University of Maryland,...
Hi, I suspect that something went wrong when you generated files for cns. You could check your pdb and mtf files in a text editor. I find it easier to keep...
I am using Red hat Linux 5 and Fedora. I am trying to install CNS since last one year. My problem is I am trying "cns_solve_1.21". But can't proceed at all. I...
1948
Gerard DVD Kleywegt
gerard@...
Jul 7, 2010 9:25 pm
Traditionally, the Protein Data Bank (PDB) has been accessed mostly by PDB accession code, or by searches based on information regarding, for instance, a ...
Hi, I would like to use CNS for structural calculations, and I am very much a novice. I have problem getting my files (NMR assignments) in the right format for...
Hi there, Can someone tell more or point to what's about CNS 1.3? Thanks, Alan -- Alan Wilter S. da Silva, D.Sc. - CCPN Research Associate Department of...
1952
Axel Brunger
brunger@...
Jul 9, 2010 3:25 pm
I plan to release CNS v1.3 shortly (1-2 weeks). Axel ... Axel T. Brunger Investigator, Howard Hughes Medical Institute Professor of Molecular and Cellular...
1953
Gerard DVD Kleywegt
gerard@...
Jul 15, 2010 11:02 am
If you were born before the Dutch lost their first World Cup final, you may remember the days when "everybody" knew that PDB entry 1tim was the structure of...
1954
Gerard DVD Kleywegt
gerard@...
Jul 15, 2010 12:26 pm
We are pleased to announce the 2010 Cryo-EM Modeling challenge and a PSB 2011 workshop, organized by Steven Ludtke, Wah Chiu, Helen Berman and Gerard Kleywegt....
1955
Manuel Than
than@...
Jul 19, 2010 3:47 pm
Dear all, we are refining a structure that contains several crystal contacts formed by metal ions that bridge the molecule in the assymmetric unit to ...
Hi, I hope I understand your question correctly. I'm not sure that application of any patches to the program is necessary. If you want to restrain the...
You should take a look at igroup statement. Search for "symmetry operation" here http://cns.csb.yale.edu/v1.2/faq/frame.html Some information there may lead...
1958
Gerard DVD Kleywegt
gerard@...
Jul 22, 2010 1:34 pm
Introducing one-click access to PDB data at PDBe ... When you visit the newly redesigned home page of the Protein Data Bank in Europe (PDBe; http://pdbe.org/),...
1959
Gerard DVD Kleywegt
gerard@...
Jul 22, 2010 2:06 pm
There is an EMBL Interdisciplinary Post-doc ("EIPOD") position available to work on the validation of low-resolution structural models obtained from ...
1960
Axel Brunger
brunger@...
Jul 22, 2010 9:29 pm
================================================================== Announcing version 1.3 (general release) of the software: Crystallography & NMR System (CNS)...
1961
Gerard DVD Kleywegt
gerard@...
Jul 29, 2010 11:08 am
As part of the recent Midsummer Make-over of the Protein Data Bank in Europe website (PDBe; http://pdbe.org/), we introduced a new Wizard tool. The purpose of...
