Does anyone know why the bash-version of the cns_solve_env disappeared from recent CNS tarballs? I think it was included at some point (at least I do have it...
2010
Ed Pozharski
pozharski
Jan 10, 2011 3:27 pm
Does anyone know if the pre-compiled 32-bit binaries for osx will run without trouble on 64-bit machine? If yes, then getarch may need to be fixed to recognize...
2011
Ed Pozharski
pozharski
Jan 10, 2011 4:10 pm
Ben, I am referring to this on cns website (under installation, at the top of the page) "A binary installation is available for Intel Macintosh OS X, running ...
2012
Ed Pozharski
pozharski
Jan 10, 2011 5:36 pm
... Great - as you may have deduced from post scriptum, I don't know much about macs. This is exactly the kind of information that sheds light on this issue -...
2013
Ben Eisenbraun
bpeisenbraun
Jan 10, 2011 10:40 pm
Hi Ed, ... I'm not sure that's up to date. I have built 32-bit versions of the last few patch releases of 1.3, since the tarballs don't actually contain...
2014
Ben Eisenbraun
bpeisenbraun
Jan 10, 2011 10:40 pm
Hi Ed, ... Yes, 32-bit binaries will run fine on 64-bit OS X machines. ... That said, I don't know of any pre-compiled 32-bit binaries for CNS. The latest...
2015
Robert Sweet
sweet@...
Jan 14, 2011 3:00 pm
We are offering RapiData 2011, the thirteenth offering of our popular course: Rapid Data Collection and Structure Solving at the NSLS: A Practical Course in...
2016
Sanishvili, Ruslan
rsanishvili@...
Jan 18, 2011 6:48 pm
Dear Colleagues, This is a reminder that the on-line applications are being accepted for the 4th annual CCP4 summer school "From data collection to structure ...
2017
Justin Lecher
j.lecher@...
Jan 19, 2011 8:48 pm
Hi all, I am using ccpn/aria/cns combination for my structural work. I discovered a probably bad fact during the aria/cns structure calculation. In the ccpn...
2018
Robert Sweet
sweet@...
Jan 20, 2011 5:10 pm
This may be the last reminder that we are offering RapiData 2011, the thirteenth offering of our popular course: Rapid Data Collection and Structure Solving at...
2019
Gerard DVD Kleywegt
gerard@...
Jan 26, 2011 2:31 pm
Hi all, There is an EMBL Inter-disciplinary Post-doc (EIPOD) position available to work on "Validation of low resolution structural models". For details, see: ...
2020
Panne Daniel
panne@...
Jan 27, 2011 8:11 pm
A postdoc position at the interface of structural biology and high throughput genome analysis is available at the EMBL. The position is part of the EMBL...
2021
lastsnare99
Feb 8, 2011 9:33 pm
Hello All, First time posting here, hopefully this is the right place to ask my question. I'm attempting to install CNS Solve 1.3 on a handful of Intel-based...
2022
Kevin Jude
kmjxxx
Feb 8, 2011 9:58 pm
Hi Nate, I believe this is the problem with $CNS_SOLVE/bin/getarch that came up recently. You can find the solution in the archives: ...
2023
Axel Brunger
brunger@...
Feb 8, 2011 10:09 pm
This should have been fixed with the latest revision (# 5) available from the CNS download site. Please download it and let me know if this latest version...
2024
Nate Michals
nate_michals
Feb 9, 2011 2:32 pm
Thank you Kevin and Alex for your suggestions. I tried both solutions (separately and together), but still encounter the same problem. (Bad CPU type in...
2025
Ed Pozharski
pozharski
Feb 9, 2011 3:57 pm
Fully realizing how ridiculous it is for me to provide any advice on Apple products, but what does getarch returns on this system? I presume that you mean...
2026
Ben Eisenbraun
bpeisenbraun
Feb 9, 2011 4:06 pm
Hi Nate, ... That only produces an error when running as root. The default user privilege on OS X only allows setting the max stacksize to the kernel max ...
2027
Ben Eisenbraun
bpeisenbraun
Feb 9, 2011 4:35 pm
(I added the list cc: back in for the archives.) Hi Nate, ... So that proves what you already know: you have a Core Duo machine, and those CPUs are 32-bit...
2028
Ed Pozharski
pozharski
Feb 9, 2011 6:16 pm
... That would explain it, but then this in CNS installation instructions must be incorrect: "A binary installation is available for Intel Macintosh OS X,...
2029
Nate Michals
nate_michals
Feb 9, 2011 7:06 pm
Thanks Ben and others, here is the update so far, I installed gfortran (and gcc) from hpc.sourceforge.net, verified that they are installed by typing gcc and...
2030
Ben Eisenbraun
bpeisenbraun
Feb 9, 2011 7:28 pm
Hi Nate, ... That looks fine. The hpc.sourceforge.net compilers install to /usr/local/bin, so you can also run 'which gfortran' to ensure that it's picking up...
2031
Nate Michals
nate_michals
Feb 9, 2011 8:58 pm
Hi Pryank, Thanks for the suggestion. I tried this, and it seems to fail with the message: Installation directory: /usr/local/cns_solve_1.3/mac-intel-darwin ...
2032
Nate Michals
nate_michals
Feb 9, 2011 9:02 pm
Hi Ben, I'll tinker with the Makefiles per your suggestion and see if I can make some progress. Thanks again ! ... Nate Michals Jr. Systems Administrator ...
2033
Nate Michals
nate_michals
Feb 10, 2011 9:35 pm
Update so far, I tested on a 64-bit Mac and didn't get the "Bad CPU type in executable" message. It still didn't install correctly but perhaps I'm getting...
2034
Nate Michals
nate_michals
Feb 10, 2011 9:36 pm
Whoops, I completely forgot this: source cns_solve_env looks like it works now ! =D Nate Michals Jr. Systems Administrator Hauptman-Woodward Institute 700...
2035
Gerard DVD Kleywegt
gerard@...
Feb 25, 2011 8:44 pm
Hi all, In October 2011, the Worldwide Protein Data Bank (wwPDB; wwpdb.org) will host a scientific symposium in Cold Spring Harbor, celebrating the 40th...
2036
Gerard DVD Kleywegt
gerard@...
Feb 25, 2011 9:01 pm
[Forwarded on behalf of the EMDataBank.org Team] We are proud to announce that the cryoEM community has reached a significant milestone: more than 1000 maps...
2037
Gerard DVD Kleywegt
gerard@...
Mar 2, 2011 7:17 pm
Hi all, As you may recall, the Protein Data Bank in Europe (PDBe; http://pdbe.org) announced a substantial make-over of its website last summer, including the ...
2038
Nate Michals
nate_michals
Mar 5, 2011 12:12 pm
Hi Pryank, I copied the file over as Makefile.header.2.gfortran, and just in case it might conflict, I renamed Makefile.header.2.pgf95 to...
