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  • Members: 1328
  • Category: Biology
  • Founded: Mar 23, 2001
  • Language: English
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Hi I try to create a generate file from a protein pdb file, but the program stopped because the residue LLP not found in topology files. Now I have the...
2 May 23, 2012
9:38 pm

Ed Pozharski
pozharski
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Hello, I'm new on CNS. I would like to generate N structures during a molecular dynamics. I employed model_anneal.inp downloaded on...
6 May 18, 2012
2:54 am

Ed Pozharski
pozharski
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Hi Everyone, I am having some trouble with make_cv.inp. I am using cns 1.3. My issue is that I have a hkl file that I want to convert to a cv file. My hkl file...
2 Apr 25, 2012
12:31 pm

Ed Pozharski
pozharski
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Hi I am facing the problem of putting correct label in the MTZ file. Ctruncate (ccp4 GUI) programme uses some default label which is not sufficient to run...
1 Apr 14, 2012
1:25 pm

sunil
sktewarybt1993
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Dear Colleagues, Building on the success of the past 3 years, we are pleased to announce the fourth annual CCP4 summer school at Advanced Photon Source (APS), ...
7 Apr 12, 2012
3:09 pm

Sanishvili, Ruslan
rsanishvili@...
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Are you an aspiring science communicator who has a wonderful way with words? The Protein Data Bank in Europe (PDBe; http://pdbe.org/) is looking for an ...
1 Apr 11, 2012
2:15 pm

Gerard DVD Kleywegt
gerard@...
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Hi, I have a situation in which I would like to have different scale factors for NOE and hydrogen bond restraints using annealing. I looked on the "input...
1 Apr 5, 2012
8:53 pm

jruhym
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Dear All, I installed cns-solve.1.21 coupled with Aria2. When I tried to run aria2 I got the error message as: EntityValueError: USER ERROR...
2 Apr 4, 2012
4:37 pm

Ed Pozharski
pozharski
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Dear Colleagues, on behalf of the selection committee I'd like to draw your attention to the the Trueblood award: ...
1 Apr 3, 2012
9:01 pm

Paul Adams
PDAdams@...
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Hi Everyone I was wondering if anyone has a working topology and param file (CNS) for one of the following ligands with protons to allow me to do a structure...
1 Mar 26, 2012
8:33 pm

Mike Osborne
ozzy672003
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Hi Everyone, I was wondering if the cns libraries have definitions for 2-mercaptoethanol and 2-hydroxyethyl disulfide. If not, how can I generate those...
2 Mar 26, 2012
6:30 pm

Ed Pozharski
pozharski
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I am running CNS 1.2 calculations of NMR structure of symmetric DNA duplex (like (CGAAATTTCG)2 ) and would like to use NCS restraints included in the...
2 Mar 8, 2012
8:49 pm

Alexey Denisov
denisrita
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Dear All,   I would like to use CNS 1.2 to calculate peptide structure based on NMR restraints. I am wondering where can I get a water refinement script...
1 Mar 5, 2012
7:16 pm

Weidong Hu
lakesu
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Dear All, I was generated topologies/parameters for a new residue in a peptide. The generate.inp created a correct peptide bond from the new residue to the...
4 Mar 5, 2012
10:57 am

Krisztina Feher
feher_krisztina
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Hi all, As you may recall, the Protein Data Bank in Europe (PDBe; http://pdbe.org) has launched a number of PDB archive browsers in the past two years. These...
1 Mar 1, 2012
7:36 pm

Gerard DVD Kleywegt
gerard@...
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Hi I have been trying to install CNS 1.3 (using source installer - cns_solve_1.3_all.tar.gz) on ubuntu on i686 architecture. After giving make install command...
2 Feb 22, 2012
4:29 pm

Ed Pozharski
pozharski
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Hi Please tell me how to install CNS 1.3 on ubuntu on i686 architecture. Is binary installation (cns_solve_1.3_all_intel-mac_linux.tar.gz) possible on i686 or...
1 Feb 21, 2012
4:16 pm

meet_kum04
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Hi all, In April we will once again organise the EMBO practical course on "Computational structural biology - from data to structure to function". The ...
1 Feb 20, 2012
7:32 pm

Gerard DVD Kleywegt
gerard@...
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Hi all, As many of you know by now, the Protein Data Bank in Europe (PDBe; http://pdbe.org) regularly produces Quips, short interactive stories about QUite...
1 Feb 3, 2012
8:47 pm

Gerard DVD Kleywegt
gerard@...
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Hi all, The Protein Data Bank in Europe (PDBe; http://pdbe.org) releases new, improved and updated versions of its tools and resources twice a year. Now it's...
1 Feb 3, 2012
7:46 pm

Gerard DVD Kleywegt
gerard@...
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Hi, This is my first time posting so thanks in advance for any help. First a little background...I have been able to derivatize my crystal with K2PtI6 and was...
2 Feb 3, 2012
4:46 pm

Kiran
dr.kirankulk...
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We are extending the deadline because seats are still available for RapiData 2012, the fourteenth offering of our popular course: Rapid Data Collection and...
1 Jan 30, 2012
7:42 pm

Robert Sweet
sweet@...
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Half of the seats are still available for RapiData 2012, the fourteenth offering of our popular course: Rapid Data Collection and Structure Solving at the...
1 Jan 20, 2012
7:53 pm

Robert Sweet
sweet@...
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Structural Bioinformatics Lab, Department of Biotechnology & Bioinformatics, Korea University, Seoul Korea Brainpool Research Associate – Full time, fixed...
1 Jan 14, 2012
4:17 pm

intekhab alam
intekhab_78
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Many seats are still available for RapiData 2012, the fourteenth offering of our popular course: Rapid Data Collection and Structure Solving at the NSLS: A...
1 Jan 14, 2012
2:31 am

Robert Sweet
sweet@...
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SHIFTX2 (Protein chemical shift prediction program) version 1.07 is released at Jan 04, 2012. It is updated its prediction models for the backbone and some...
1 Jan 10, 2012
7:42 pm

gwnmr
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We are offering RapiData 2012, the fourteenth offering of our popular course: Rapid Data Collection and Structure Solving at the NSLS: A Practical Course in...
1 Jan 6, 2012
2:13 pm

Robert Sweet
sweet@...
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Hi i am trying to run the CNS with the refine.inp but it is giving below error. Please help if anybody knows how to break it. EVALUATE: symbol $LOG_LEVEL set...
2 Dec 27, 2011
10:21 pm

Ed Pozharski
pozharski
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Hi all, If you should suffer from Christmas Disease, and you were to cut yourself while carving the turkey, you could be in trouble! Find out why in the last ...
1 Dec 23, 2011
1:31 pm

Gerard DVD Kleywegt
gerard@...
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Dear all I am trying to install cns1.3 on an ubuntu linux system. I downloaded: http://cns-online.org/download/v1.3/cns_solve_1.3_all.tar.gz and then after...
4 Dec 16, 2011
10:35 pm

sunil tewary
sktewarybt1993
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