Hello, I am new to cnsbb. I am currently working on modifying CNS v1.1 to perform our own calculations. I have been individually emailing around and am...
715
Mark A. White
white@...
Jul 2, 2003 3:00 pm
Jonathan, When CNS is compiled the makefile creates a unique directory tree for that specific architecture (linux, alpha, sgi, etc.). ...
716
Tara Sprules
tarasprules
Jul 2, 2003 8:47 pm
Hi, I have a protein, that when the residues are numbered in sequence 1-64 everything works just fine. Unfortunately, I started out with the numbering scheme...
717
Tara Sprules
tarasprules
Jul 2, 2003 10:26 pm
I guess I should make myself a little more clear- I have two sets of data- one corresponding to the numbering scheme 1-64 the other to 47-64-1-46. I have...
718
Tara Sprules
tarasprules
Jul 3, 2003 12:08 am
In quadruple checking my files, I now realize that actually my problem hinges on whether I define a disulfide bridge or not. So I guess I do have some noes...
719
jonathanspenner
Jul 3, 2003 9:56 am
Thank you for the information, Prof. White. I have placed the proper files and references in the proper folders. However, I am now trying to compile the *.f...
720
JONATHAN SPENNER
jonathanspenner
Jul 8, 2003 12:45 pm
Hello, I am new to cnsbb. I am currently working on modifying CNS v1.1 to perform our own calculations. I have been emailing around and am finding it hard to...
721
niseboy
herschelwade
Jul 8, 2003 12:45 pm
Hello, Has anyone had problems with unusually high r-factors in low resolution range? How can this problem be fixed? How does this problem arise? After a...
722
Nat Echols
nat@...
Jul 8, 2003 2:37 pm
... You can do this, but it will not be linked into the main executable without re-invoking the build script. Actually, from within the architecture/source...
723
Billy Poon
bpoon@...
Jul 9, 2003 7:19 am
Dear all, Does anyone know about or have a reference that describes what the anisotropic correction does? I have run model_stats.inp with and without the...
724
Poul Nissen
nissen@...
Jul 10, 2003 7:42 am
This is not right - is this a MR solution and perhaps even a partial model? In that case you could try to turn off the bulk solvent correction and use the 5 -...
725
Mark A. White
white@...
Jul 14, 2003 3:52 pm
Hello, After upgrading my (OLD?) 1.2 GHz Athelon system to RH 9 I started to experience problems with the Xfit display flickering. The problem was ...
726
wai khit
zhenglin88
Jul 24, 2003 8:07 am
I am attempting to do a simulated annealing of a large RNA molecule and I get the following error message when I begin the torsional dynamics portion of the...
727
zijie zhou
zzjqd@...
Jul 25, 2003 9:31 am
Hi,all; I am wondering if there is any difference between the data collected from synchron and that from in-house. The data I collected(several data sets) was...
728
ziming zhang
zhangziming
Jul 25, 2003 7:09 pm
I am attempting to calculate protein structure using RDC and NOE restraints. However, I don't have the program to calculate the following parameters. Do you ...
729
Mei-I Su
msu@...
Jul 25, 2003 7:09 pm
Hi, I am a graduate student and new to CNS. I am using CNS version 1.0 and trying to calculate a DNA structure. But the first problem I encountered is I can...
730
raji
raji77
Jul 26, 2003 3:39 pm
Hi Mei-I Su, For all your queries regarding atom definitions and more, look up the section "CNS Language Tutorials" under tutorial section on CNS webpage. ...
731
raji
raji77
Jul 26, 2003 3:40 pm
Hi Mei-I Su, For all your queries regarding atom definitions and more, look up the section "CNS Language Tutorials" under tutorial section on CNS webpage. ...
732
raji
raji77
Jul 26, 2003 3:41 pm
Hi Mei-I Su, For all your queries regarding atom definitions and more, look up the section "CNS Language Tutorials" under tutorial section on CNS webpage. ...
733
raji
raji77
Jul 26, 2003 3:43 pm
Hi Mei-I Su, For all your queries regarding atom definitions and more, look up the section "CNS Language Tutorials" under tutorial section on CNS webpage. ...
734
raji
raji77
Jul 27, 2003 12:48 am
Hi Mei-I Su, For all your queries regarding atom definitions and more, look up the section "CNS Language Tutorials" under tutorial section on CNS webpage. ...
735
Pedro Antonio Reche
reche@...
Jul 28, 2003 2:12 pm
Dear All, first of all I will apology because this is not one question but many, and because of my lack of knowledge with CNS. Actually, this is the first time...
736
Pedro Antonio Reche
reche@...
Jul 28, 2003 2:18 pm
Dear All, first of all I will apology because this is not one question but many, and because of my lack of knowledge with CNS. Actually, this is the first time...
737
K.A.Kulkarni
mahan_2001
Jul 29, 2003 6:44 am
Dear all, I have a problem associated with installing NVIDIA driver for NVIDIA GeForce 2 MX (generic) card on redhat 9.0(kernel version 2.4.20-8). If anybody...
738
Mei-I Su
msu@...
Jul 30, 2003 6:33 am
I tried to calculate a DNA structure and used generate_seq.inp to create .mtf file for a sequence. I use "CNS_TOPPAR:dna-rana-allatom.param" in ...
739
Prem Joseph
prbj123
Aug 8, 2003 3:21 pm
HI all, does anyone have a script to convert dyana input restraint files (file.aco, file.upl used for NMR structure calculation) to CNS restraints files. ...
740
Prem Joseph
prbj123
Aug 11, 2003 5:37 pm
HI all, NMR calculation of protein structures: In th case of methyls of Val or Leu which are sometimes degenerate in the NMR spectrum, the structure...
741
Prem Joseph
prbj123
Aug 11, 2003 6:10 pm
HI, I am doing a NMR structure calculation on a protein I like to inroduce a cis-proline in my protein. I did not find it in the topology files. can someone...
742
Mukherjee, Munia
mumukher
Aug 11, 2003 7:29 pm
Prem, Here is what we do for cis-prolines in CNS. Maybe you could repost this at the CNS users site. Dealing with Cis-Prolines in both DYANA and CNS for...
743
Pilar Saiz Vela
psaiz@...
Aug 12, 2003 3:20 pm
Hi all! Does anybody know where/how can I find the correct values of dihedral and impropers for a naphthyl ring? I have tried the Dundee PRODRG Server and the...
