Hi All, I received a lot of emails regarding my off-topic post, and am very grateful. I was also requested by multiple people on the list what the references...
933
Fred Muskett
fwmuskett
Apr 6, 2004 8:31 am
Dear All, We are trying (with little success) to compile cns on a Sun Blade 2000 UltraSPARC III running Solaris 9. We get lots of compilation errors. Any...
934
Douglas Kojetin
djkojeti@...
Apr 7, 2004 11:20 am
Hi All- Does anyone have an nmr water refine script for use in CNS (or XPLOR) that you would be willing to share? There's a script used in ARIA that I may try...
935
Xray Questions
xray_questions
Apr 11, 2004 6:24 am
Hi: I was wondering if anybody knows how to use a heavy atom pdb file (12 sites) to get a NCS matrix using get_ncs_matrices.inp. It seems like I need a...
936
stojanoff vivian
stojanof
Apr 12, 2004 7:41 pm
Crystallization: focus on membrane proteins May 19 -20,2004 http://protein.nsls.bnl.gov http://www.nsls.bnl.gov/users/meeting/2004/workshop8.htm The workshop...
937
Sabine Ruth Quadt
sabine.quadt@...
Apr 18, 2004 12:35 pm
Hallo, does anybody have a .top and .par file for sulfo-tyrosine? If not, how can I build them myself? Thanks, Sabine -- ...
938
Pilar Saiz Vela
psaiz@...
Apr 20, 2004 10:14 am
HI! Does anybody know which is the usual way to restraint a disulfide bond in a NMR structure calculation with CNS? Do I have to use distance restraints...
939
Mukherjee, Munia
mumukher
Apr 20, 2004 3:23 pm
Hi, You have to specify the disulfide bonds right in the begining in the input file "generate_seq.inp" where the sequence of your peptide will be read and a...
940
Amjad Farooq
amjadfarooq
Apr 23, 2004 6:11 pm
Hi Everyone, I am trying to install CNS on Red Hat Linux 9.0. I have both the Fortran 77 and the C compiler installed but the program still seems to complain....
941
laxmicantan gurunathan
lgurunathan
May 3, 2004 7:19 pm
Dear CNS users, I am having a problem in connecting the carbohydrate moeity NAG(N-acetyl glucosamine) with the Asn residue of my protein.I used the following...
942
Mark A. White
white@...
May 3, 2004 9:11 pm
Guru, Here is an example of a Cys - HEME bond patch in generate.inp. Note that the connectivity and bond distance/angles are specified in the TOP and PARAM...
943
asmith123
May 3, 2004 9:58 pm
Dear All: I am in need of some help with an OSX (10.2.3) recompile. I installed CNS using fink and an older version of Bill Scott's install script. I have a...
944
Edward A. Berry
eaberry@...
May 3, 2004 10:45 pm
Speaking of architecture: Users on the newer (i86) linux machines with GNU sed version 4.0.7 are getting an error message from their .(t)cshrc during login: ...
945
cao chunyang
caoccyzw@...
May 4, 2004 2:56 am
Hi, I suggest you install g77 first in OSX, then try recompile CNS. G77 compile is free in somewhere of the website. It should be no problem. You can also add ...
946
gaibrielle2001
zhenglin88
May 4, 2004 7:22 am
Could you please reactivate this account gaibrielle@......
947
gaibrielle2001
zhenglin88
May 4, 2004 7:24 am
Could you please reactivate this account whitbyross@......
948
gaibrielle2001
zhenglin88
May 4, 2004 7:24 am
Could you please reactivate this account whitbyross@......
949
Harry M. Greenblatt
harry.greenblatt@...
May 4, 2004 9:47 am
BS"D ... The sugar (501) should be listed first, and then the protein residue. See if that fixes things. Harryt ... Harry M. Greenblatt Research Associate Dept...
950
Amjad Farooq
amjadfarooq
May 4, 2004 8:36 pm
Hello Everyone, I was wondering if anybody out there has succeeded in installing XPLOR 3.851 on a Linux platform. I tried to install XPLOR 3.851 on Redhat...
951
Jorge
iulek@...
May 5, 2004 7:49 am
Dear friends, Thanks to several helps (especially from Edwin Pozharski), I could manage to solve the problem of several ligands (not) interacting at the active...
952
Gerard DVD Kleywegt
gerard@...
May 5, 2004 9:02 am
it looks like the subroutines writtc and giveis have not been compiled. in cns writtc lives in dynio.f and giveis in matrix.f so they may live in the same ...
953
James Stroud
stroudj@...
May 5, 2004 10:02 pm
Hello All, Is there a way to make an NOE with a symmetrically related molecule in CNS? For example, say I have a pseudo-continuous piece of DNA running through...
954
Hua Wei
deepsea98cn
May 7, 2004 11:31 pm
Hi There, Does anyone know how to refine a site that is half occupied by ligand A and half occupied by ligand B? Thanks a lot! Hua Harvard University ...
955
Jorge
iulek@...
May 9, 2004 2:08 pm
Dear cnsbb'ers As no one could answer my question, I tried my own guess "I thought of running two times alternate.inp, one time for each chain. Is this correct...
956
Gerard DVD Kleywegt
gerard@...
May 10, 2004 9:55 am
... it was never intended to be used in this way, but i suspect that the jiffy program ACONIO might do the trick for you (manual lives at...
957
Kaushik Chakraborty
kcnet1
May 10, 2004 9:56 am
Hi, I tried to make CNS (latest version) run on AIX Power4 (it's an unsupported platform). Makefile deatils (in AIX/source folder): F77 = f77 F77STD = -w -g ...
958
Q. Steven Xu
qsxu@...
May 14, 2004 12:52 am
Dear all, I have a structure with 6 copies of mol. in one asymm. unit. 3 of them (A, C, E chain) have alternate conformations on the same residue, say resid...
959
bobay20002000
May 17, 2004 5:15 pm
Hi everybody - I think that I have a fairly easy question that can be answered. I am using CNS 1.0 and I am a newbie at it. I used NMR to obtain all of my...
960
bobay20002000
May 18, 2004 6:57 am
I would like to post a follow up with what I have attempted to answer the "dimer" question in CNS. Below is what I have tried so far: 1.) Manually went into...
961
florent.barbault
flotchinson
May 18, 2004 9:01 am
Hi, I did several dimer solution structures by NMR because I was working on DNA and RNA... I give you a cns script called GEN_SEP.inp (SEP stands for ...
