Dear CNS users, I am having a problem in connecting the carbohydrate moeity NAG(N-acetyl glucosamine) with the Asn residue of my protein.I used the following...
942
Mark A. White
white@...
May 3, 2004 9:11 pm
Guru, Here is an example of a Cys - HEME bond patch in generate.inp. Note that the connectivity and bond distance/angles are specified in the TOP and PARAM...
943
asmith123
May 3, 2004 9:58 pm
Dear All: I am in need of some help with an OSX (10.2.3) recompile. I installed CNS using fink and an older version of Bill Scott's install script. I have a...
944
Edward A. Berry
eaberry@...
May 3, 2004 10:45 pm
Speaking of architecture: Users on the newer (i86) linux machines with GNU sed version 4.0.7 are getting an error message from their .(t)cshrc during login: ...
945
cao chunyang
caoccyzw@...
May 4, 2004 2:56 am
Hi, I suggest you install g77 first in OSX, then try recompile CNS. G77 compile is free in somewhere of the website. It should be no problem. You can also add ...
946
gaibrielle2001
zhenglin88
May 4, 2004 7:22 am
Could you please reactivate this account gaibrielle@......
947
gaibrielle2001
zhenglin88
May 4, 2004 7:24 am
Could you please reactivate this account whitbyross@......
948
gaibrielle2001
zhenglin88
May 4, 2004 7:24 am
Could you please reactivate this account whitbyross@......
949
Harry M. Greenblatt
harry.greenblatt@...
May 4, 2004 9:47 am
BS"D ... The sugar (501) should be listed first, and then the protein residue. See if that fixes things. Harryt ... Harry M. Greenblatt Research Associate Dept...
950
Amjad Farooq
amjadfarooq
May 4, 2004 8:36 pm
Hello Everyone, I was wondering if anybody out there has succeeded in installing XPLOR 3.851 on a Linux platform. I tried to install XPLOR 3.851 on Redhat...
951
Jorge
iulek@...
May 5, 2004 7:49 am
Dear friends, Thanks to several helps (especially from Edwin Pozharski), I could manage to solve the problem of several ligands (not) interacting at the active...
952
Gerard DVD Kleywegt
gerard@...
May 5, 2004 9:02 am
it looks like the subroutines writtc and giveis have not been compiled. in cns writtc lives in dynio.f and giveis in matrix.f so they may live in the same ...
953
James Stroud
stroudj@...
May 5, 2004 10:02 pm
Hello All, Is there a way to make an NOE with a symmetrically related molecule in CNS? For example, say I have a pseudo-continuous piece of DNA running through...
954
Hua Wei
deepsea98cn
May 7, 2004 11:31 pm
Hi There, Does anyone know how to refine a site that is half occupied by ligand A and half occupied by ligand B? Thanks a lot! Hua Harvard University ...
955
Jorge
iulek@...
May 9, 2004 2:08 pm
Dear cnsbb'ers As no one could answer my question, I tried my own guess "I thought of running two times alternate.inp, one time for each chain. Is this correct...
956
Gerard DVD Kleywegt
gerard@...
May 10, 2004 9:55 am
... it was never intended to be used in this way, but i suspect that the jiffy program ACONIO might do the trick for you (manual lives at...
957
Kaushik Chakraborty
kcnet1
May 10, 2004 9:56 am
Hi, I tried to make CNS (latest version) run on AIX Power4 (it's an unsupported platform). Makefile deatils (in AIX/source folder): F77 = f77 F77STD = -w -g ...
958
Q. Steven Xu
qsxu@...
May 14, 2004 12:52 am
Dear all, I have a structure with 6 copies of mol. in one asymm. unit. 3 of them (A, C, E chain) have alternate conformations on the same residue, say resid...
959
bobay20002000
May 17, 2004 5:15 pm
Hi everybody - I think that I have a fairly easy question that can be answered. I am using CNS 1.0 and I am a newbie at it. I used NMR to obtain all of my...
960
bobay20002000
May 18, 2004 6:57 am
I would like to post a follow up with what I have attempted to answer the "dimer" question in CNS. Below is what I have tried so far: 1.) Manually went into...
961
florent.barbault
flotchinson
May 18, 2004 9:01 am
Hi, I did several dimer solution structures by NMR because I was working on DNA and RNA... I give you a cns script called GEN_SEP.inp (SEP stands for ...
962
bobay20002000
May 18, 2004 6:24 pm
Alright I have a solution. First off, calculate each mtf and extended pdb file separately for each monomer (i.e. A.mtf, B.mtf, A.pdb, and B.pdb). Then type the...
963
bill1116.tw
May 19, 2004 12:06 pm
Dear CNS users, I have a problem in connecting methyl group of small compound with the sulfide in Cys residue of my protein. How should I do making script in...
964
Mark A. White
white@...
May 19, 2004 2:12 pm
Here is an example of a Cys - HEME bond patch in generate.inp. Note that the connectivity and bond distance/angles are specified in the TOP and PARAM files...
965
maryli12
May 19, 2004 10:11 pm
Hi, I found this message but no answers. Anyone knows the answers? I encountered the same problem. Thanks a lot! Mary Does anyone know how to refine a site...
966
Joel Tyndall
joel.tyndall@...
May 20, 2004 6:41 am
Hi folks, I'm usually pretty good at this but I'm now on windows and that is creating a few issues. I successfully installed CNS on windows and for an Xray...
967
Demetres D. Leonidas
ddl@...
May 20, 2004 6:46 am
Put the occupancy of ligand A to 0.5 and that of ligand B 0.5 . Refine using restraints that do not allow the two ligand molecules to interact with each other...
968
Mark A. White
white@...
May 20, 2004 4:24 pm
Mary and Hua, Here is an example for a ligand on a two-fold. It removes the VDW interactions between the selected residue and itself. If you follow the ...
969
Joel Tyndall
joel.tyndall@...
May 21, 2004 8:11 am
Hello again, I'm adding an unnatural amino acid in to my protein but unfortunately I get this error below. I have added in the appropriate topology as a normal...
970
Andrew Wong
whyandrew
May 21, 2004 8:17 am
Hi Just want to know is there any easy way to make anomalous file for wavelength other than that of Cu/Mo, which are included in CNS's library? Thanks ...
