customcdf : custom CDF

customcdf · custom CDF

Group Information

Members: 41
Category: Biotechnology
Founded: Jun 20, 2006
Language: English

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1 New Member - 1 New Message - New Questions

Description

This group is for discussing probe identity and annotation issues on popular expression microarray platforms such as GeneChip from Affymetrix and Sentrix from Illumina.

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Custom CDF for Drosophila melanogaster based on FlyBase IDs Hello, In the Drosophila community we mostly use FlyBase as our favourite database for genes and transcripts since it is very well annotated. Is there a Posted - Tue Dec 1, 2009 11:52 am	Christoph Jüschke christoph.jueschke@... Send Email
Re: AFFX Probes in CustomCDF Hi Denise, We only uses two files from Affymetrix to build custom CDF, one is cdf file, which has the mapping between probeset and probe, the other is sequence Posted - Mon Nov 9, 2009 7:02 pm	Manhong Dai manhongdai Offline Send Email
Re: Probeset size difference among affymetrix chips Hi Lei, The difference is caused by that the two chips don't have many probes in common. I think the two chips are designed this way. Thus, in my opinion, Posted - Mon Nov 9, 2009 6:56 pm	Manhong Dai manhongdai Offline Send Email
Re: AFFX Probes in CustomCDF Hi, Thanks for the swift response. :) Is there an Affy file that you would recommend for figuring out what the AFFX probes are? Thanks, Denise Posted - Mon Nov 9, 2009 5:35 pm	Denise denise_rpga Offline Send Email
Probeset size difference among affymetrix chips Hello Manhong, Currently I'm doing a meta analysis by combining microarray data from different platforms. I'd like to ask a question about probeset difference Posted - Mon Nov 9, 2009 6:17 am	lxh4info Offline Send Email
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Message History

	Jan	Feb	Mar	Apr	May	Jun	Jul	Aug	Sep	Oct	Nov	Dec
2009	8	3					3		4	1	6	1
2008	6	1	1	2	7	4	4	1		3	2
2007	4	2	4	12	2	2	12	4	6	7		10
2006							1

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