customcdf : custom CDF

customcdf · custom CDF

Group Information

Members: 41
Category: Biotechnology
Founded: Jun 20, 2006
Language: English

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4 New Messages - New Questions

Description

This group is for discussing probe identity and annotation issues on popular expression microarray platforms such as GeneChip from Affymetrix and Sentrix from Illumina.

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Re: Custom CDF for Drosophila melanogaster based on FlyBase IDs Hi Manhong, thank you for your reply. It would be great if you could include FlyBase transcript IDs in version 13. When I do the re-mapping of the Affymetrix Posted - Fri Dec 4, 2009 1:39 pm	Christoph Jüschke christoph.jueschke@... Send Email
Re: Custom CDF for Drosophila melanogaster based on FlyBase IDs Hi Christoph, We can include flybase Transcripts in version 13, or do you prefer other type? If you want to create it, I would suggest to generate a flat CDF Posted - Thu Dec 3, 2009 6:21 pm	Manhong Dai manhongdai Offline Send Email
Custom CDF Version 12.1.0 is released Dear Custom CDF/WGAS User, Custom cdf packages version 12.0.0 is just upgraded to 12.1.0, in order to be compatible with R 2.10.z and Bioc 2.5. You've received Posted - Wed Dec 2, 2009 6:25 pm	daimh@... manhongdai Offline Send Email
Custom CDF for Drosophila melanogaster based on FlyBase IDs Hello, In the Drosophila community we mostly use FlyBase as our favourite database for genes and transcripts since it is very well annotated. Is there a Posted - Tue Dec 1, 2009 11:52 am	Christoph Jüschke christoph.jueschke@... Send Email
Re: AFFX Probes in CustomCDF Hi Denise, We only uses two files from Affymetrix to build custom CDF, one is cdf file, which has the mapping between probeset and probe, the other is sequence Posted - Mon Nov 9, 2009 7:02 pm	Manhong Dai manhongdai Offline Send Email
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Message History

	Jan	Feb	Mar	Apr	May	Jun	Jul	Aug	Sep	Oct	Nov	Dec
2009	8	3					3		4	1	6	4
2008	6	1	1	2	7	4	4	1		3	2
2007	4	2	4	12	2	2	12	4	6	7		10
2006							1

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