This may be a bug to handle the latest GO files. You may try these
recent gene info files here instead:
http://biosun1.harvard.edu/complab/dchip/gene_info_file.htm

or do not specify GO files.

Cheng

--- In dchip@yahoogroups.com, "martinstrand" <martin_f_strand@...>
wrote:
>
> I have the same problem,
> the GO files are read, but when parsing the NetAffx CSV there is an
> error where a term is not found.
> I use the latest files from Affymetrix and GO.
>
>
> --- In dchip@yahoogroups.com, "reubenk74" <reubenk74@> wrote:
> >
> > Hello,
> >
> > I'm new user for the dChip.
> > While making information files, I am getting error message. I
have
> > cut and pasted the message below. Can anybody help me on this?
> > Thank you very much!!!
> >
> > Make dChip information file
> > Reading Gene ontology file 'C:\Program Files\dChip\Gene
Ontology
> > (GO) structure files\process.ontology.txt'...
> > Found 12369 Gene Ontology terms
> > Reading Gene ontology file 'C:\Program Files\dChip\Gene
Ontology
> > (GO) structure files\function.ontology.txt'...
> > Found 8430 Gene Ontology terms
> > Reading Gene ontology file 'C:\Program Files\dChip\Gene
Ontology
> > (GO) structure files\component.ontology.txt'...
> > Found 2149 Gene Ontology terms
> >
> > Parsing NetAffx Annotation CSV file 'C:\Program
Files\dChip\Gene
> > Ontology (GO) structure files\HG-U133_Plus_2.na22.annot.csv',
Round
> > 1 ...
> > Line 0
> > Cannot find the term '0006874: calcium ion homeostasis'; may
> > update to the latest GO files
> >
> > Error in parsing CSV file
> >
> > Finished}
> >
>