The GO files i used was downloaded via the link from your page, but it works
if i do not spesify the GO files.

However, when I have the gene info file and try to get the external data,
the program reads lines from the specified txt file,
but each time it shuts down and asks to send a error report.

How do i get a CDF for the affymetrix chip?

Martin

>From: "Cheng Li" <cli@...>
>Reply-To: dchip@yahoogroups.com
>To: dchip@yahoogroups.com
>Subject: [dChip] Re: Help!!

>This may be a bug to handle the latest GO files. You may try these
>recent gene info files here instead:
>http://biosun1.harvard.edu/complab/dchip/gene_info_file.htm
>
>or do not specify GO files.
>
>Cheng
>
>--- In dchip@yahoogroups.com, "martinstrand" <martin_f_strand@...>
>wrote:
> >
> > I have the same problem,
> > the GO files are read, but when parsing the NetAffx CSV there is an
> > error where a term is not found.
> > I use the latest files from Affymetrix and GO.
> >
> >
> > --- In dchip@yahoogroups.com, "reubenk74" <reubenk74@> wrote:
> > >
> > > Hello,
> > >
> > > I'm new user for the dChip.
> > > While making information files, I am getting error message. I
>have
> > > cut and pasted the message below. Can anybody help me on this?
> > > Thank you very much!!!
> > >
> > > Make dChip information file
> > > Reading Gene ontology file 'C:\Program Files\dChip\Gene
>Ontology
> > > (GO) structure files\process.ontology.txt'...
> > > Found 12369 Gene Ontology terms
> > > Reading Gene ontology file 'C:\Program Files\dChip\Gene
>Ontology
> > > (GO) structure files\function.ontology.txt'...
> > > Found 8430 Gene Ontology terms
> > > Reading Gene ontology file 'C:\Program Files\dChip\Gene
>Ontology
> > > (GO) structure files\component.ontology.txt'...
> > > Found 2149 Gene Ontology terms
> > >
> > > Parsing NetAffx Annotation CSV file 'C:\Program
>Files\dChip\Gene
> > > Ontology (GO) structure files\HG-U133_Plus_2.na22.annot.csv',
>Round
> > > 1 ...
> > > Line 0
> > > Cannot find the term '0006874: calcium ion homeostasis'; may
> > > update to the latest GO files
> > >
> > > Error in parsing CSV file
> > >
> > > Finished}
> > >
> >
>
>

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