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Reply | Forward Message #2702 of 2749 |
RE: [dChip] Re: Help!!

Martin,

 

You can check if the external data file is saved in txt format. dChip manual has links to CDF files:

http://biosun1.harvard.edu/complab/dchip/open%20group.htm#cdf

 

Cheng

 

-----Original Message-----
From: dchip@yahoogroups.com [mailto:dchip@yahoogroups.com] On Behalf Of Martin Strand
Sent: Tuesday, May 01, 2007 6:25 PM
To: cli@...; dchip@yahoogroups.com
Subject: RE: [dChip] Re: Help!!

 

The GO files i used was downloaded via the link from your page, but it works
if i do not spesify the GO files.

However, when I have the gene info file and try to get the external data,
the program reads lines from the specified txt file,
but each time it shuts down and asks to send a error report.

How do i get a CDF for the affymetrix chip?

Martin

>From: "Cheng Li" <cli@....edu>
>Reply-To: dchip@yahoogroups.com
>To: dchip@yahoogroups.com
>Subject: [dChip] Re: Help!!

>This may be a bug to handle the latest GO files. You may try these
>recent gene info files here instead:
>http://biosun1.harvard.edu/complab/dchip/gene_info_file.htm
>
>or do not specify GO files.
>
>Cheng
>
>--- In dchip@yahoogroups.com, "martinstrand" <martin_f_strand@...>
>wrote:
> >
> > I have the same problem,
> > the GO files are read, but when parsing the NetAffx CSV there is an
> > error where a term is not found.
> > I use the latest files from Affymetrix and GO.
 



Tue May 1, 2007 11:12 pm

l7501
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Message #2702 of 2749 |
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Hello, I'm new user for the dChip. While making information files, I am getting error message. I have cut and pasted the message below. Can anybody help me on...
reubenk74
Offline Send Email
Apr 24, 2007
5:08 am

I have the same problem, the GO files are read, but when parsing the NetAffx CSV there is an error where a term is not found. I use the latest files from...
martinstrand
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Apr 27, 2007
1:13 pm

This may be a bug to handle the latest GO files. You may try these recent gene info files here instead: ...
Cheng Li
l7501
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Apr 28, 2007
12:59 am

The GO files i used was downloaded via the link from your page, but it works if i do not spesify the GO files. However, when I have the gene info file and try...
Martin Strand
martinstrand
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May 1, 2007
10:27 pm

Martin, You can check if the external data file is saved in txt format. dChip manual has links to CDF files: ...
Cheng Li
l7501
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May 1, 2007
11:13 pm

Dear Cheng, I am quite new at running DChipSNP, and have a basic question; when I am trying to filter genes in preparation of gene clustering analysis (for now...
Corina Shtir
cshtir
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May 3, 2007
9:53 pm

Corina, Since this is SNP array, probably you should not use P call % in filtering. Cheng ... From: dchip@yahoogroups.com [mailto:dchip@yahoogroups.com] On...
Cheng Li
l7501
Offline Send Email
May 4, 2007
12:14 am
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