Eric, You can click the "Analysis"; icon on the upper-left corner to go to the analysis view. Cheng ... From: eric collisson [mailto:ericcollisson@...] ...
1053
Pedro Jares
pjares
Mar 2, 2005 4:57 pm
I want to see gene expression on chromosomes, using the View data along chromosome in Dchip 1.3 (29-10-04). In the manual it says that you should select the ...
1054
Jason R. Smith
sjorges2002
Mar 2, 2005 7:31 pm
Hi, does anyone know how the RMA model differs from using the MBEI model on PM only probes. They seem identical in form to me. Jason...
1055
Jason R. Smith
sjorges2002
Mar 2, 2005 7:42 pm
Is the normalization procedure the real difference between these approaches? jason...
1056
lshdong
Mar 3, 2005 12:51 am
Hi, all, Any idea about difference between U test and T test with log transfer? I think it depends on the distribution. But how to check distribution with a...
1057
Pedro Jares
pjares
Mar 4, 2005 9:27 am
Dear all, I am having problems trying to create a gene info file for the HU133A. I have tried to use tool in dchip: make dchip information file. I Unloaded the...
1058
Cheng Li
l7501
Mar 4, 2005 4:41 pm
Pedro, For the latest CSV files, InterPro protein domain information may not be available. One can make gene info files using both the old CSV and new CSV ...
1059
Yongtao YU
yutiaotiao
Mar 9, 2005 4:24 am
Hi all, I was trying to load the data of the Affymetrix Human Mapping 50K Xba 240 Array into dChipSNP. I just followed manual. After specifying the CEL data...
1060
Cheng Li
l7501
Mar 9, 2005 5:11 pm
Yongtao, DChip cannot analyze 50K SNP arrays right now. We are debugging and validating its functions for this purpose. Cheng ... From: Yongtao YU...
1061
yanjun_june
Mar 9, 2005 8:37 pm
Hi, All, I am new here. Can someone tell me where I can download the three GO files? I went to the GO website, then I lost. The chip I am using is HG-U133A. ...
1062
David Carter
dcarter442000
Mar 9, 2005 9:04 pm
They can be found at: http://www.geneontology.org/ Scroll down a bit... ... -- David Carter London Regional Genomics Centre Robarts Research Institute, Room...
1065
kill glamour
killglamour
Mar 15, 2005 10:20 pm
Hello everybody, I'm working on human and mouse gene expression profile of aging through the AffyMetrix GeneChip array. I have 2 large datasets for human aging...
1066
mirzo3
Mar 17, 2005 3:51 pm
Dear all, please, help to solve a problem: I used before DChip on my old computer. since the old laptop is not available any more, today I have downlaoded...
1067
Hrishikesh Deshmukh
d_hrishikesh
Mar 17, 2005 4:43 pm
Mirzo, Check the file path and also make sure you are using the right CDF for the chip type you are using. Hrishi ... __________________________________ Do you...
1068
michmintz
Mar 17, 2005 5:58 pm
For publication purposes, my clustering image is not bright enough and I would like to adjust the image to make it more bright. Is there a way to adjust a...
1069
John Landers
jlanderspoly
Mar 17, 2005 6:00 pm
Hello Everyone, Has anyone created a recent human refgene file? The one listed on the dchip website is from 7/02. If so, may I receive a copy. Thanks, John...
1070
Cheng Li
l7501
Mar 17, 2005 6:15 pm
Michelle, You may try “Tools/options/clustering/displaying range”. Cheng ... From: michmintz [mailto:michmintz@...] Sent: Thursday, March 17, 2005...
1071
Cheng Li
l7501
Mar 17, 2005 6:15 pm
John, See hg12.zip or hg15.zip files here: http://biosun1.harvard.edu/complab/dchip/snp.htm Cheng ... From: John Landers [mailto:jlanderspoly@...] Sent:...
1072
michelle mintz
michmintz
Mar 17, 2005 6:28 pm
thank you Cheng Li <cli@...> wrote:Michelle, You may try “Tools/options/clustering/displaying range”. Cheng ... From: michmintz...
1073
jlanderspoly
Mar 17, 2005 7:18 pm
Thank you very much. John ... <http://us.ard.yahoo.com/SIG=129hioodr/M=298184.6191685.7192823.300117 6/D=gr ... ...
1074
Mirzokhid Rakhmanov
mirzo3
Mar 17, 2005 9:32 pm
Hi Hrishi, many thanks, it works now. Mirzo Hrishikesh Deshmukh <d_hrishikesh@...> wrote: Mirzo, Check the file path and also make sure you are using the...
1075
Srinivas S
srinivasdotcom
Mar 18, 2005 2:06 pm
Hi, We are graduate students at SUNY Buffalo working on colon tumor samples. Our goal is to identify LOH regions using the SNP 10K array. We downloaded the...
1076
Srinivas S
srinivasdotcom
Mar 18, 2005 2:08 pm
Hi, We are graduate students at SUNY Buffalo working on colon tumor samples. Our goal is to identify LOH regions using the SNP 10K array. We downloaded the...
1077
John Landers
jlanderspoly
Mar 21, 2005 8:45 pm
Hello All, I am trying to run linkage analysis in dCHIP using the Merlin option. However, I appear to be having some trouble and Merlin analysis does not...
1078
jihuafan2001
Mar 22, 2005 9:41 pm
Dear Cheng, I just downloaded the newest (Mar, 14th) version csv file for the Mouse Genome 430 2.0 Array from Affymetrix. I got the following wrong...
1079
kirstinknox
Mar 23, 2005 8:05 pm
I got the same error with the Mouse 430 2.0 csv file (also downloaded yesterday). If you have any luck fixing this, please let me know. Thanks, Kirstin ... ...
1081
dongxiaozhu
Mar 29, 2005 5:00 pm
Hi all, I am new to Dchip. Dchip generates very beautiful cluster dendrograms. My question is: can Dchip take input of distance matrix that is calculated by...
1082
Cheng Li
l7501
Mar 29, 2005 5:27 pm
Dongxiao, Dchip cann’t do this. However, you make make dchip cluster tree file based on the clustering of other software and let dchip visualize the data: ...
1083
Nicole
nicolek_m
Mar 29, 2005 11:11 pm
Hi all, I am doing some unsupervised hierarchical clustering with filtered microarray data and find that I obtain a different result when I simply CLUSTER...
1084
Dongxiao Zhu
dongxiaozhu
Mar 29, 2005 11:53 pm
Thanks so much, Cheng. If I am using R to calculate a distance matrix, is there a quick way to generate Dchip cluster tree file from R object? I looked at a ...
