Eric, You can click the "Analysis" icon on the upper-left corner to go to the analysis view. Cheng ... From: eric collisson [mailto:ericcollisson@...] ...
I want to see gene expression on chromosomes, using the View data along chromosome in Dchip 1.3 (29-10-04). In the manual it says that you should select the ...
Hi, all, Any idea about difference between U test and T test with log transfer? I think it depends on the distribution. But how to check distribution with a...
Dear all, I am having problems trying to create a gene info file for the HU133A. I have tried to use tool in dchip: make dchip information file. I Unloaded the...
Pedro, For the latest CSV files, InterPro protein domain information may not be available. One can make gene info files using both the old CSV and new CSV ...
Hi all, I was trying to load the data of the Affymetrix Human Mapping 50K Xba 240 Array into dChipSNP. I just followed manual. After specifying the CEL data...
Hi, All, I am new here. Can someone tell me where I can download the three GO files? I went to the GO website, then I lost. The chip I am using is HG-U133A. ...
They can be found at: http://www.geneontology.org/ Scroll down a bit... ... -- David Carter London Regional Genomics Centre Robarts Research Institute, Room...
Hello everybody, I'm working on human and mouse gene expression profile of aging through the AffyMetrix GeneChip array. I have 2 large datasets for human aging...
Dear all, please, help to solve a problem: I used before DChip on my old computer. since the old laptop is not available any more, today I have downlaoded...
Mirzo, Check the file path and also make sure you are using the right CDF for the chip type you are using. Hrishi ... __________________________________ Do you...
For publication purposes, my clustering image is not bright enough and I would like to adjust the image to make it more bright. Is there a way to adjust a...
Hello Everyone, Has anyone created a recent human refgene file? The one listed on the dchip website is from 7/02. If so, may I receive a copy. Thanks, John...
John, See hg12.zip or hg15.zip files here: http://biosun1.harvard.edu/complab/dchip/snp.htm Cheng ... From: John Landers [mailto:jlanderspoly@...] Sent:...
Hi Hrishi, many thanks, it works now. Mirzo Hrishikesh Deshmukh <d_hrishikesh@...> wrote: Mirzo, Check the file path and also make sure you are using the...
Hi, We are graduate students at SUNY Buffalo working on colon tumor samples. Our goal is to identify LOH regions using the SNP 10K array. We downloaded the...
Hi, We are graduate students at SUNY Buffalo working on colon tumor samples. Our goal is to identify LOH regions using the SNP 10K array. We downloaded the...
Hello All, I am trying to run linkage analysis in dCHIP using the Merlin option. However, I appear to be having some trouble and Merlin analysis does not...
I got the same error with the Mouse 430 2.0 csv file (also downloaded yesterday). If you have any luck fixing this, please let me know. Thanks, Kirstin ... ...
Hi all, I am new to Dchip. Dchip generates very beautiful cluster dendrograms. My question is: can Dchip take input of distance matrix that is calculated by...
Dongxiao, Dchip cann’t do this. However, you make make dchip cluster tree file based on the clustering of other software and let dchip visualize the data: ...
Hi all, I am doing some unsupervised hierarchical clustering with filtered microarray data and find that I obtain a different result when I simply CLUSTER...
Thanks so much, Cheng. If I am using R to calculate a distance matrix, is there a quick way to generate Dchip cluster tree file from R object? I looked at a ...
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