If you need help or any requirements on 417 Arrayer you can contact AVISO ( Germany, France , UK) web site: www.aviso-gmbh.de Regards,...
psbnguyen
psbnguyen@...
Mar 1, 2006 8:15 am
18112
Hi, The way that I calculate the fold change is first converting the log 2 to olog 10 and then get the ratio of condition 2 to condition 1. Do you have any...
I concur with this - comparisons among genes (among probes) is not valid - unless one uses of reference sample and two dyes. But this introduces the problem...
Lyons-Weiler, James
lyonsweilerj@...
Mar 1, 2006 8:16 am
18114
Hi Soumya and Maryam, Thanks for replying to my mail. What Soumya says seems to be correct to me. And Maryam I feel that the method taken by you is not...
Hi, I have a gene list in which there are more than 100 genes. How can I get the corresponding probe set ID of Affymetrix chips? Because many of these genes...
... The Affymetrix NetAffx website (https://www.affymetrix.com/site/login/login.affx) might help. There is a 'batch query' function for Probesets: Batch Query...
Dear Wu, Lih-chian How does your gene list look like. Does it have probe set ID's or some description? If you could tell me that, it would be helpful. We have...
Rekha.M
rekha.m@...
Mar 2, 2006 8:11 am
18119
If not gene symbol (HUGO), gene title, ProbesetID what is the information you have for your >100 genes? Maybe helpful to tell you which software/database to...
Michael T. Mader
m.mader@...
Mar 2, 2006 8:11 am
18120
Hello Jai & Maryam, Chui & Churchill (2003) talk about fold change of log values as: "the difference between two relative expression values can be interpreted...
hi all, I am new to this microarray technology I have to analyze a miocroarray dataset for the up-, Down-and Co- regulated genes. I have downloaded data from...
Hi Prashant, Three questions: first what hardware was used to scan in the slides? Second what kind of slides do you have - are they affymetrix or? Thirdly ...
Hi, Dan, I have tried that, but it didn't work well. When I searched by gene symbol specifically, I lost many genes. But when I tried gene title or all fields,...
Hi, Rekha, I list three examples, alpha 1ACT, Angiotensin II and 12-Lipoxygenase. Thanks for your help. Wu, Lih-chian ... some ... could ... can I ... many of ...
Hi, Is there any one who is working with MEV software? I have some questions for uploading data.(for case and control groups in triplicate) Thanks, Maryam...
Hi Jai and Soumya, Jei, you are right. By mistake I said that first I do converting of log 2 to log 10. For doing statistics my data get converted in log 2,...
Hi Maryam I have worked with Mev/TIGR for some time tell me wat can i help you Farhan Mohd Farhan Research Scholar Institute of Genomics and Integrative...
Hi all I am thinking to work on human microarray on pig. I am wondering if it is better to use a oligo or cDNA microarray. Most other cross-species ...
Hi Maryam, That should be correct then. Both method should give equivalent results. But your method seems to be more laborious. Thanks and Regards. Jai Prakash...
Hi Farhan, Thanks for your note. I have two groups with two kind of treatment at 2 time points. Group 1 : 1)treatment in triplicate at 2 hours 2)control in...
Hi Aditik: The Center for Animal Functional Genomics at Michigan State University has a 13K porcine long oligo array available. We also have several cDNA...
You are invited to submit a workshop proposal to the 2006 Computer Society Bioinformatics Conference (CSB2006). The conference's goal is to facilitate exchange...
lss-announce@...
Mar 4, 2006 10:49 am
18134
Hello all, I did some microarry experiments to test the effect of 2 factors on the gene expression of the cell, but lost my way in those complicated...
Jianbo Na
GENE-ARRAYS@...
Mar 4, 2006 10:49 am
18135
Dear Prashant Are you using any software for analyzing your data? If so which one? Regards Rekha ... From: "Prashant Srivastava"...
Rekha.M
rekha.m@...
Mar 6, 2006 8:24 am
18136
... From: microarray@yahoogroups.com [mailto:microarray@yahoogroups.com] Sent: Thursday, March 02, 2006 12:57 PM To: microarray@yahoogroups.com Subject:...
Hi all!! I am an undergraduate student doing my final year project based on analysis of gene chip data of stem cells. I have been given the data in an excel...
... The longer the sequence on the slide means more stable hybridization of sequences that are similar but not identical. Affymetrix oligo arrays were ...
Chris
christine@...
Mar 7, 2006 8:14 am
18139
You are invited to submit a poster to the 2006 Computer Society Bioinformatics Conference (CSB2006). Poster presentations describing original research in the...
lss-announce@...
Mar 7, 2006 8:15 am
18140
Hi everyone. I'm new to this list. I've used arrays for molecular interaction analyses, but am just now learning all the ins and outs of printing and...
Hello, I used Sam to find the significant genes. Now I am about the present the paper: Should I use the q-value from SAM as a p-value or I just need to...
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