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nmr_sparky

Group Information

  • Members: 353
  • Category: Chemistry
  • Founded: Jul 8, 2005
  • Language: English
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Description

This little group is opened up to facilitate experience exchaning and discussing for sparky user. Sparky, a NMR spectrum peakpicking, assignment software, can be download at ucsf(http://www.cgl.ucsf.edu/home/sparky/).

The process from NMR data to the final structure calculation includes the following components. The raw data(fid or ser)-->use "NMRPipe" to do the Fourier transform et al.-->output to "Sparky" ucsf format, and do peak picking, volumn intergating et al-->output the noe peak volumn infomation to ARIA to do the structure calculation, and if you are lucky, the final structure can be got.

The nmrpipe's group "nmrpipe", the aria's group "aria-discuss" can be found in Yahoo-Groups too. I recommend you guys whose major is biomolecular NMR join these groups.

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Re: problem with cormaspectrum command
The Sparky manual explains this. http://www.cgl.ucsf.edu/home/sparky/manual/extensions.html#CormaSpectrum " This command creates a simulated 2D homonuclear
Posted - Fri May 18, 2012 4:37 pm
Tom Goddard
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Re: problem with cormaspectrum command
Sorry for the late question. I installed Debian, but have problem to compile the newest version. I noticed that version 3.113 is running well with those
Posted - Fri May 18, 2012 4:32 pm
liufanghe
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Re: Sparky: command not found
Tom, your hint was bang-on :) I installed the 32-bit binaries for others, see: https://help.ubuntu.com/community/32bit_and_64bit under the last heading (for
Posted - Thu May 10, 2012 4:18 pm
hellerm2
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Re: Sparky: command not found
Hi Markus, Linux Sparky is 32-bit. Perhaps your virtual Ubuntu only has 64-bit libraries (libc, libm, X11, ... needed by Sparky). If this is the problem you
Posted - Wed May 9, 2012 6:46 pm
Tom Goddard
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Sparky: command not found
Hello all, I'm on a Ubuntu Virtual Machine under Windoze 7 64 bit. I have an issue with running Sparky. I've downloaded the latest Sparky version
Posted - Wed May 9, 2012 6:29 pm
hellerm2
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