hi,everyone: Now I'm working on dynamics of protein and have many questions! First,sparky can deal with T1,T2 with a seris of 2D spectra and get error without...
I wish I understood this well enough to give a truly outstanding answer, but this is as close as I can get. You are correct that Sparky calculates T1 and T2...
To add to Josh's comments .. <shameless plug> Some new software for relaxation dynamics analysis, by Edward d'Auvergne, has recently come to maturity (it has...
It would certainly be great to have Sparky released under an open source license on Sourceforge. As you say, hopefully this would encourage others to make...
hi to all! Now I'm working on 1H-15N relaxation data,and I found there is difference between the value of RH and curvefit.The former is the python of sparky,...
Hi Jlee, Are you suggesting 10% difference in the rate or the associated error estimate? I did try both programs and if I remember correctly, I got lower error...
Hi JLee, Sparky fits a decaying exponential Aexp(-Bt) to the peak heights using a least squares fit. The sum of the squares of the differences between...
Hi to all! Now I have a question on how to use sparky to read the spectrum files which are processed and saved by Gifa. Can sparky do that? Or, what should I...
Hi Ivan, The standard Sparky distribution does not have a way to handle GIFA format. Hopefully someone else has conversion programs from GIFA to one of the...
Hi, I use Sparky 3.112 under Mandrake 10.2. I get very small sized fonts in some extension menu windows.The size might be 3 or 4 and is hardly readable. This ...
Hi Eiso, Many thanks for your prompt reply. Similar line existed in tkutil.py though not in tkFont.py. I forced the font size as suggested by you and that...
Hi Mandar, There are two places in Sparky file sparky/python/sparky/tkutil.py just a few lines apart that have "font = 'Courier'". If you change both to 'font...
Hi Thomas, Thanks for correcting me. It worked out perfect now. I have one more trivial question, perhaps you can help. In Linux, Sparky's 'File Open' (also...
Hi Mandar, The Tk file dialog that Sparky uses has no option to exclude hidden files (ones beginning with ".") from the list. The ability to filter allows you...
Hi, I am new for NMVIEWJ. I just downloaded and installed the NMRViewJ on my PC with Linux system. I have two questions: 1) Why I have no dual strip...
Hi, I am wondering that can I resize the spectrum window to fit the spectrum. For example, I have a hsqc spectrum 1H from 6 to 10 ppm, 15N from 106 to 126 ppm....
hello group, does anybody have a python script similar to the peaktable (``pb'') command, only using data heights instead of volumes? i've tried to tweak...
... you can try the following (not tested) : # --------------------------------------------------------------------------- # def peak_field(self, assignment,...
Hi Markus, Unfortunately the unmodified peak table extension in Sparky 3.110 gives the same error you report when saving a file, and the list text has ...
Hi to all! I've finished the structure calculation of a protein and now work on its dynamics. Unfortunately I found it's fully anisotropic. As a newer, I don't...
Weir, Which program are you using to do the relaxation analysis. I haven't gotten into the full analysis of relaxation data yet, but others here in the lab...
... hi tom, ... gives ... aahhh ... i seem to remember that i asked you about this very problem coupla years ago ... sorry for my bad memory! ;) ... version. ...
... hi, ... same here. that's normal ... ... as josh pointed out, TENSOR is certainly an option. however, i prefer to do this kind of stuff on the command...
I'm currently running Sparky 3.112 on Windows XP. Would like to install new extensions into sparky but am having some problems. I copy the .py file into the...
Hi, I do not know of a how-to guide to install new Sparky Python extensions. I would not expect installations for Windows to be different from other platforms...
Hello and thank you for the response. All of the python scripts are located in the directory: C:\Program Files\sparky\python\sparky\ This is the sparky_init.py...
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