thanks ....all the bellow permissions were needed. The spectra refreshing is now decent.....having testing sparky for some weeks I have to tell you that its a...
Hello, I wonder if its possible to regenerate/make the assignment list from a resonance list...somehow I cannot import or create assignments that I did in...
The "read peak list" (rp) dialog in Chimera does not take a list of resonances as you indicated in your email. It takes lines like (DNA example) C2H5-G1H1...
Dear Sparky Users, I initially ran CYANA using peaks that were well defined (no overlaps) in the 15N-edited and 13C-edited spectra. After cycle7, the CYANA run...
Hi, Please have a look at CyanaGarant2Sparky extension (http://www.cerm.unifi.it/Sparky/extension.html). Perhaps format converter also can be used. I used...
... you could try http://www.nmr.chem.uu.nl/~eiso/bin/peaks2sparky.awk to make a speaky peaklist. ambiguous assignments will be put in the peak label. (check...
Dear Eiso and Mandar, Thanks for the suggestions. I used Gaussian fit method previously but I tried peak heights yesterday. It worked wonderfully. The program ...
Hi, There is no capability in Sparky to hide the triangle that connects assignment labels to peak markers. You can create a label that is not associated with a...
Thank you very much for your timely replay! I hope this feature will be added in the future distributions. It would be better if the triangles and the...
Hello all, the function "add grid vert" just stop working.... all the other functions are working fine such as the "add grid horz" but I don't know what is...
Hi Pirate, The F5 key works correctly in my test of Sparky 3.112 on Linux. If you select "add grid vert" from the Sparky Pointer Mode panel using the mouse,...
Hello, thanks for providing this newsgroup. I´m happy that I found it. If I select show resonances, marking-lines and resonance names are properly displayed...
... Hello, ... Yes it has been working fine since I installed .... ... Does not work...and when I use add grid both it just adds the horizontal grid!!!...not...
Hi Chris, The resonances that get displayed are filtered using the "assignment guessing options" (menu entry Peak / Assignments / Assignment Guessing, shortcut...
Hi Pirate, Ok, sounds like a bug. Restoring default settings would not help since there is no setting that says don't display vertical grid lines. You can ...
Dear SPARKY and CYANA users, In SPARKY, for my protein the overall intensities of all cross peaks in the 13C-edited NOESY spectra are medium or weak. Hence,...
... do you mean CANDID or noeassign perhaps? CYANA can be run in many ways if Im correct in CANDID the distances are calibrated with the assigned distances in...
Hi Eiso, I have one subquery on this, should one filter off the diagonal peaks from the peaklist? I tried it both ways and got slightly different results. ...
Hello Tom, here you have the save file....another thing ...the overlay function was not working as well .... Restoring default settings .....I mean...cancel...
... the diagonal peaks are filtered out by candid, so you can let them in. if there's a real difference in the results (using the same random seed), there...
Dear users, I'm using sparky for some months now but this is my first post. Here's my questions: I used different methods (gaussian & lorentzian fit, box...
... the lorentzian fit is not very useful in practice imho. the tails are much to wide if you've used a window function. a gaussian usually fits pretty well if...
Hi everyone, I have some questions: 1. Anyone can help me for using noe2xplor.py converts a NOE peak assignment lists from Sparky into an XPLOR-NIH distance...
Dear Mandar and Eiso, I asked our NMR spectroscopist regarding the relatively weaker intensities of all cross-peaks in 13C-edited spectra (when compared with...
Shouldn't one calibrate NOE-based distances independently in each spectrum? I do not expect the 13C-edited and 15N-edited NOESYs to have necessarily the same...
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