Whoops, sorry I missed your message ... just catching up on some email. Glad you found the scripts in the end. I've been meaning to clean up those scripts and...
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Dear all, when I try to export the peaks of a N15 NOESY-HSQC in DYANA/XEASY format, the output is a bit different from the required one (see below). Although I...
Hi all, I have been using successfully the mirror peak assignments checking tool. It is very useful for the NOESY spectra assignments to derive constraints for...
Hi Evangelos, Here's a trick to use the mirror peaks tool with two C13-hsqc-noesy spectra (aromatic and aliphatic). Copy all the peak markers in the aromatic...
Thank you Tom, I followed your advice and tried the trick of merging the spectra. But instead of creating a huge file spanning from the aliphatic to the ...
Dear Sparky Users, 1. I have analysed all the backbone and sidechain peaks using backbone and sidechain experiments. 2. I analysed 3D 15N-NOESY and created...
Hi Please open both 13C and 15N spectra in the same Sparky session. If you haven't manually assigned NOESY, please also load your resonance list using 'rl'....
hi, open the project which contains all the sprctrums (have been assigned) type rl then save as *.shifts,maybe you need have a check. for the noesy spetrum,...
Hi, Thank you for your suggestions. I did open the 13C and 15N NOESY spectra in the same Sparky session. I manually assigned NOESY spectra. Since I am not very...
Hi, most simple solution is using two prot file simulatenously, but as seperate files. On CALC.cya, write like this: peaks := C.peaks,N.peaks # names of...
Hi, most simple solution is using two prot file simulatenously, but as seperate files. On CALC.cya, write like this: peaks := C.peaks,N.peaks # names of...
Hi Vivek, Cyana needs to know identity of the three chemical shift columns in your *.peaks file. If you use Xeasy, first few lines have that information. ...
Hi, I would like to know how to prepare a publication quality figure from the strip window? Two workarounds I tried are- 1. 'pt' each strip to separate...
Has anyone successfully installed Sparky with Windows Vista? I unzipped the files as described in the install.htmal instructions, but when I click on Program...
Hi, I just tried Sparky on Windows Vista and it does not start for me either. It works without Python if you edit the sparky/bin/sparky.bat script with a text...
Dear Mandar, You can try the following way: Do strip plot the way you have mentioned. In the stripplot window type PT and store the file in *.ps format. When...
HI Vivek, Resolution enhancement was not my problem. I wanted to know if 'pt' will somehow output all strips instead of only the one selected. Thomas wrote...
Dear all, We can use other automatic NOE assignment programs [such as CANDID (from ETH, Zuich) , SANE (from Scripps)] to speed up the process of NOE...
HI Liwen, Sparky reads extra column in the peak list as user note. If you add fifth column say "CAN" or SAN", then you should be able to display that on the...
Hi Liwen, When you use the "read peaks" (rp) command the peak markers created on the spectrum are selected and you can use the color ornaments (cr) command to...
Hello all, i'm just curious. I open Sparky, load a project, and after some work or not, i decide to delete a peak. So i select the peak(s) and hit the del-key....
Dear Tom Goddard and Mandar Naik, Thank you very much for your timely reply! Now, I can color the peak labels (not peaks) differently according to the peak...
Hi Markus, I'm not sure why deleting a peak in Sparky for the first time takes a few seconds on some machines. On a Mac OS 10.4 with Sparky 3.112 and about...
Hi Liwen, Here's some Python code you can put in your Sparky directory to add a shortcut "lS" that selects all the peak labels for currently selected peaks....
Hi all, I'd like to create a simulated NOE spectrum using cx command but when I try to run the simulation I have this message in the "Create Corma Spectrum"...
Hi Marianna, The CORMA Spectrum command (cx) unfortunately does not work on Windows. It should work on Linux or Macintosh computers. It needs to run a...
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