My recollection is that you have to set up a directory like the one in the example provided with your cyana restraints converted to cns .tbl files , a .mtf...
I agree. Its most likely that the bash on her box is not at /bin/bash. She needs to correct the path on the first line of her generate.sh (if she still wants...
Thanks you all for so many suggestions. Betty Matthew Revington <mrevingt2@...> wrote: My recollection is that you have to set up a directory like the one...
I am trying convert an NC plane by using the vnmr2ucsf executable, but when I follow the directions outlined on the website, I get an error that states: ...
The procpar parameters used by vnmr2ucsf are listed in the Sparky manual http://www.cgl.ucsf.edu/home/sparky/manual/files.html#ConvertVarian You might take a...
Hi John, There is no Sparky command to flush the spectrum data it has cached and redraw the spectrum windows. You might be able to do it in a cumbersome way...
Hi John, Ok, I see now that Sparky opens the spectrum file and does not close the file until the spectrum is no longer being viewed in Sparky. On unix systems...
I'm trying to use R to do ANOVA on spectra in ucsf format. I can read the ucsf file into R using the ucsfdata command and the "-m" modification. This puts...
Hello users, I have a NOESY spectrum of a 10 mer DNA strand with well separated peaks . I am hoping to model the DNA based on these distance and other dihedral...
Hello, I'm trying to setup the NOE's assignment possibilities using (na)... the tables shows up ..looks fine..BUT..;when I press the DIAGRAM option the diagram...
Hello all, I think this problem was discussed here before ...I have Sparky 3.113 and I cannot find which version of Chimera should I install in order to start...
... For me Chimera version 1.2143 works fine with Sparky 3.113 (Windows XP). I guess for the newer Sparky version (3.114) using python 2.5 one could/should use...
The Sparky manual describes compatible Chimera versions for Sparky versions up to 3.112. For Sparky 3.113 you should try the recommended version(s) for 3.112....
Hi Miles, Sparky 3.113 has a mild problem on Leopard. It tries to start the X server if finds that one is not already started. Leopard also tries to start...
... Hi TJ, Yes, pipe2ucsf and the other command-line programs that come with Sparky are hard to find on the Mac. The are in Sparky.app/Contents/Resources/bin ...
Hello, I'm a new sparky user, the "guinea pig" of the lab as everyone else uses only NMRdraw. I was wondering if anyone in the D.C. Baltimore area would be...
Hi Sébastien, hi all, If anyone is still interested in sampling-lineshape dependence in Multidimensional Fourier Transform of non-linear sampling patterns I ...
Hello, I think you skipped this one, I'm trying to setup the NOE's assignment possibilities using (na)... the tables shows up ..looks fine..BUT..;when I press...
The noesy assignment diagram ("na", diagram button) does not work in Sparky 3.113. That bug was fixed in 3.114 but that version is currently only compiled...
Dear All , I had been working with both Sparky and Simpson recently. from the last week, I experience a new problem that i couldn't open the sparky unless i...
Hi Karthick, Both Sparky and Simpson use the Tcl library and I suspect that Sparky won't start after you install Simpson because Sparky is getting the Tcl ...
Dear Tom , Thank you so much for your valuable suggestion. You had saved my time from uninstalling and installing separately each programmes. Thanks again, ...
Dear All, I want to compare some results published in the BMRB database with my spectra assigned using sparky. I was planining on just loading the str file...
I have a quick question about nmr titratikon results. My protein-ligand titration curves after plotting the weighted average chemical shift against ratio of...
Hi Sandra, Sparky does not fit chemical shift values. It can only fit peak heights from a sequence of spectra, for example, at various mixing times (menu...
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