nmr_sparky : Messages : 474-503 of 615

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474	I have a quick question about nmr titratikon results. My protein-ligand titration curves after plotting the weighted average chemical shift against ratio of...	sandra K sandramike_05	Jan 8, 2008 8:31 pm
475	Hi Sandra, Sparky does not fit chemical shift values. It can only fit peak heights from a sequence of spectra, for example, at various mixing times (menu...	Tom Goddard yopypu	Jan 9, 2008 12:06 am
476	Hi... Try using Analysis module of CCPN package, that quantifies chemical shit/intensity variations upon titration. Kamil ... From: sandra K...	Camilsky kamil_tamiola	Jan 9, 2008 7:35 am
477	hi, I'm having a problem on some machines that dialogs and windows done automatically come to the foreground when they should. for example when clicking a...	eisoab	Feb 5, 2008 2:39 pm
478	Hi Eiso, There are no options in Sparky regarding whether windows like peak lists or spectrum windows come to the foreground. I think this must be a windowing...	Thomas Goddard yopypu	Feb 8, 2008 1:42 am
479	Hello all, I think that I've observed some strange problems when opening very large ucsf files (about 2-3 GB) e.g. sometimes part of spectrum disappears. Does...	krzysztof.kazimierczuk krzysztof.ka...	Feb 12, 2008 7:18 am
480	Hi Krzysztof, I do not think Mac or Windows versions of Sparky will work correctly with UCSF spectrum files larger than 2 Gbytes, at least not for the data ...	Tom Goddard yopypu	Feb 12, 2008 7:29 am
481	... this is on Centos5 with GNOME. there are only 2 options I can find to set for the mouse & window focus behaviour, and no combination brings the windows to...	eiso eisoab	Feb 12, 2008 9:33 am
482	I managed to get the correct behaviours in KDE with the following setting. Control Center->Window-Behaviour select 'Focus under mouse' Auto Raise [off] Delay...	eiso eisoab	Feb 13, 2008 4:32 pm
483	Hi everyone I am trying to process protein relaxation data using NORMAdyn. But the way NORMAdyn calculates errors is throwing me off. Is there a reference to...	anu_gl16	Feb 26, 2008 8:32 pm
484	Hi, How can I download sparky? Maria Tareen Dr J Fisher NMR Group School of Chemistry University of Leeds LS2 9JT, UK ... Never miss a thing. Make Yahoo...	Maria Tareen mariatareen27	Feb 28, 2008 5:32 pm
485	You can download Sparky from the Sparky web site: http://www.cgl.ucsf.edu/home/sparky/ Tom...	Thomas Goddard yopypu	Feb 28, 2008 5:35 pm
486	I currently download sparky, I also have a topspin. My file is in bruker format, so i want to know how can i change the file from bruker format to UCSF...	kck0606hk	Mar 10, 2008 12:02 am
487	... http://www.google.com/search?num=100&hl=en&safe=active&q=convert+bruker+ucsf&btnG=Search with sparky comes a program called: bruk2ucsf Eiso...	eisoab	Mar 10, 2008 12:05 am
488	Dear all Kindly let me know how to install sparky in suse linux 10.3 system as i have GNU C library version 2.6. Which command i will have to use to install...	amritabhu2005	Apr 11, 2008 7:48 am
489	Hello, I wonder if someone did relaxation fitting from 3D spectra using sparky?...	pp_muscimol	Apr 15, 2008 8:21 am
490	Hello .... can Sparky convert a series of planes from 3D spectra to a single 2D spectra? thanks...	pp_muscimol	Apr 16, 2008 11:39 am
491	ucsfdata can project 3D files into 2D ones. see option: -pN project along axis N taking data value of largest magnitude. Eiso...	eiso eisoab	Apr 16, 2008 11:51 am
492	HI again, when I use the ucsfdata command with -pN it reports unknown option... is the syntax correct? see below please ... ucsfdata: Unknown option -pN thanks...	PP pp_muscimol	Apr 18, 2008 9:20 am
493	typing ucsfdata alone will give you a help message which should answer your question. Eiso...	eiso eisoab	Apr 18, 2008 9:45 am
494	I tried this myself when I saw the post. It's handy! It helped me see something weird about my C(co)NH. Most of the peaks from about 49-53 ppm (on carbon...	adelaide98	Apr 20, 2008 8:34 pm
495	Hello Andrea, fortunately you are part of this forum. The script works fine and the -o is indeed needed. thanks PP ... me... ... option......	pp_muscimol	Apr 21, 2008 7:54 am
496	actually I just noted that the 15N axis is inverted ...I corrected using NMRpipe xf3.com script. PP...	pp_muscimol	Apr 21, 2008 8:54 am
497	Hi,everyone, when I do following the suggestions in the cis_output.py ,sparky gives ... File ...	dongyi2827	May 13, 2008 4:04 am
498	It looks like your startup script isn't valid python code, specifically when defining a function you need at least one executable statement. Try changing def...	Jonathan Helmus ajax142	May 13, 2008 4:41 pm
499	yes,that's the problem! thanks a lot! ... "/usr/local/src/sparky/platforms/linux-2.6.9/sparky-install/python/sparky/pythonshell.py",...	dongyi2827	May 14, 2008 2:29 am
500	Hello Forum, I have an HSQC spectrum for which I have predicted the assignments from the known spectra. Is there a way to get a spectrum out of the peak list....	Ankit techankit	May 30, 2008 4:38 pm
501	Hi Ankit! Could you be a little more precise? i don't get what are you going to do... You have the peaklist and want to obtain something like "artificial...	Krzysztof Kazimierczuk krzysztof.ka...	May 30, 2008 8:25 pm
502	Hi Ankit, Sparky includes a program peaks2ucsf that places Gaussians at specified position to make a spectrum. The program is in the sparky/bin directory and...	Tom Goddard yopypu	May 30, 2008 8:35 pm
503	Hi Actually I have an HSQC spectrum for which the NMR structure has already been solved. So, instead of assigning the peaks, I tried using SPARTA(one of the...	ankit gupta techankit	May 30, 2008 10:32 pm

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