nmr_sparky : Messages : 486-515 of 615

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486	I currently download sparky, I also have a topspin. My file is in bruker format, so i want to know how can i change the file from bruker format to UCSF...	kck0606hk	Mar 10, 2008 12:02 am
487	... http://www.google.com/search?num=100&hl=en&safe=active&q=convert+bruker+ucsf&btnG=Search with sparky comes a program called: bruk2ucsf Eiso...	eisoab	Mar 10, 2008 12:05 am
488	Dear all Kindly let me know how to install sparky in suse linux 10.3 system as i have GNU C library version 2.6. Which command i will have to use to install...	amritabhu2005	Apr 11, 2008 7:48 am
489	Hello, I wonder if someone did relaxation fitting from 3D spectra using sparky?...	pp_muscimol	Apr 15, 2008 8:21 am
490	Hello .... can Sparky convert a series of planes from 3D spectra to a single 2D spectra? thanks...	pp_muscimol	Apr 16, 2008 11:39 am
491	ucsfdata can project 3D files into 2D ones. see option: -pN project along axis N taking data value of largest magnitude. Eiso...	eiso eisoab	Apr 16, 2008 11:51 am
492	HI again, when I use the ucsfdata command with -pN it reports unknown option... is the syntax correct? see below please ... ucsfdata: Unknown option -pN thanks...	PP pp_muscimol	Apr 18, 2008 9:20 am
493	typing ucsfdata alone will give you a help message which should answer your question. Eiso...	eiso eisoab	Apr 18, 2008 9:45 am
494	I tried this myself when I saw the post. It's handy! It helped me see something weird about my C(co)NH. Most of the peaks from about 49-53 ppm (on carbon...	adelaide98	Apr 20, 2008 8:34 pm
495	Hello Andrea, fortunately you are part of this forum. The script works fine and the -o is indeed needed. thanks PP ... me... ... option......	pp_muscimol	Apr 21, 2008 7:54 am
496	actually I just noted that the 15N axis is inverted ...I corrected using NMRpipe xf3.com script. PP...	pp_muscimol	Apr 21, 2008 8:54 am
497	Hi,everyone, when I do following the suggestions in the cis_output.py ,sparky gives ... File ...	dongyi2827	May 13, 2008 4:04 am
498	It looks like your startup script isn't valid python code, specifically when defining a function you need at least one executable statement. Try changing def...	Jonathan Helmus ajax142	May 13, 2008 4:41 pm
499	yes,that's the problem! thanks a lot! ... "/usr/local/src/sparky/platforms/linux-2.6.9/sparky-install/python/sparky/pythonshell.py",...	dongyi2827	May 14, 2008 2:29 am
500	Hello Forum, I have an HSQC spectrum for which I have predicted the assignments from the known spectra. Is there a way to get a spectrum out of the peak list....	Ankit techankit	May 30, 2008 4:38 pm
501	Hi Ankit! Could you be a little more precise? i don't get what are you going to do... You have the peaklist and want to obtain something like "artificial...	Krzysztof Kazimierczuk krzysztof.ka...	May 30, 2008 8:25 pm
502	Hi Ankit, Sparky includes a program peaks2ucsf that places Gaussians at specified position to make a spectrum. The program is in the sparky/bin directory and...	Tom Goddard yopypu	May 30, 2008 8:35 pm
503	Hi Actually I have an HSQC spectrum for which the NMR structure has already been solved. So, instead of assigning the peaks, I tried using SPARTA(one of the...	ankit gupta techankit	May 30, 2008 10:32 pm
504	Hi, I have an amateur question with respect to data saving in Sparky (v. 3.114 under Win Vista). I have a project with several spectra in it. When I am trying...	vvostri	Jun 3, 2008 6:12 am
505	... try saving the individual spectra using 'Save as' with a different name. (xx.save). The shortcut is 'fa' after that saving the project will use the new...	eisoab	Jun 3, 2008 9:13 am
506	Thank you for response, Eiso. The "save as" also work only for the first loaded spectrum. For the rest of them the following message is returned: ...	vvostri	Jun 3, 2008 3:41 pm
507	... [ I don't have windows so I can't really test anything here. ] at which point exactly [you get this message]? what happens if you change the name of the...	eisoab	Jun 3, 2008 3:48 pm
508	I have only just started using sparky so I may be being silly but I have installed sparky on 2 computers and it worked fine for the first day but the second...	rachel.edwards63 rachel.edwar...	Jun 3, 2008 6:36 pm
509	Renaming the spectra by "st" appears to work - I am able to save the spectra now. Thank you Eiso! In response to your question, the error message appears in...	vvostri	Jun 3, 2008 6:37 pm
510	Hi all, I want to output my 2D spectrum on MATLAB into Sparky format. So, I have read the description on the Sparky binary format in the manual, but am...	yohmatsuki	Jun 11, 2008 10:45 pm
511	Hi Yoh, The easy way to go is use the "matrix2ucsf" program that comes with Sparky. Then you just need a raw matrix of binary floating point values. Here's...	Tom Goddard yopypu	Jun 12, 2008 4:51 am
512	Hi Tom, Nice function. Great help. It worked out! Thank you very much. -Yoh ... Besides ... swapped....	yohmatsuki	Jun 12, 2008 10:48 pm
513	Hello everyone! I am going to write a simple python script which: 1 .Opens sequence of 2D spectra 2. Sets given contour scale in each spectrum 3. Saves each...	krzysztof.kazimierczuk krzysztof.ka...	Jun 13, 2008 2:43 pm
514	Hello forum, I have a list of assignments (N-H HSQC) in BMRB format (NMR-STAR). Is there a program available that can convert it to Sparky list format so that...	ankit gupta techankit	Jun 13, 2008 4:31 pm
515	Hi Krzysztof, Sparky spectrum view windows do not use a Tk Canvas. They draw directly into a Tk Frame. So the canvas.postscript() call will not help you...	Tom Goddard yopypu	Jun 13, 2008 5:26 pm

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