It looks like your startup script isn't valid python code, specifically when defining a function you need at least one executable statement. Try changing def...
Hello Forum, I have an HSQC spectrum for which I have predicted the assignments from the known spectra. Is there a way to get a spectrum out of the peak list....
Hi Ankit! Could you be a little more precise? i don't get what are you going to do... You have the peaklist and want to obtain something like "artificial...
Hi Ankit, Sparky includes a program peaks2ucsf that places Gaussians at specified position to make a spectrum. The program is in the sparky/bin directory and...
Hi Actually I have an HSQC spectrum for which the NMR structure has already been solved. So, instead of assigning the peaks, I tried using SPARTA(one of the...
Hi, I have an amateur question with respect to data saving in Sparky (v. 3.114 under Win Vista). I have a project with several spectra in it. When I am trying...
... try saving the individual spectra using 'Save as' with a different name. (xx.save). The shortcut is 'fa' after that saving the project will use the new...
... [ I don't have windows so I can't really test anything here. ] at which point exactly [you get this message]? what happens if you change the name of the...
I have only just started using sparky so I may be being silly but I have installed sparky on 2 computers and it worked fine for the first day but the second...
Renaming the spectra by "st" appears to work - I am able to save the spectra now. Thank you Eiso! In response to your question, the error message appears in...
Hi all, I want to output my 2D spectrum on MATLAB into Sparky format. So, I have read the description on the Sparky binary format in the manual, but am...
Hi Yoh, The easy way to go is use the "matrix2ucsf" program that comes with Sparky. Then you just need a raw matrix of binary floating point values. Here's...
Hello everyone! I am going to write a simple python script which: 1 .Opens sequence of 2D spectra 2. Sets given contour scale in each spectrum 3. Saves each...
Hello forum, I have a list of assignments (N-H HSQC) in BMRB format (NMR-STAR). Is there a program available that can convert it to Sparky list format so that...
Hi Krzysztof, Sparky spectrum view windows do not use a Tk Canvas. They draw directly into a Tk Frame. So the canvas.postscript() call will not help you...
Hi All, I have mailed earlier in the group but it seems my mail didn't reach anyone. I have been trying to get peak lists that can be read in sparky (list...
... sounds like you want to create a HSQC peaklist from a shift list, correct? 15N or 13C HSQC peaklist? the NMR-STAR format is a moving target so I don't know...
Hi, For pasting spectra from sparky to MS word, you first save your spectra with ' .ps' at the end of the spectrum name and then you open it in paintshop. From...
Hi You can save your spectrum with ' .ps ' at the end and then open this spetra in paintshop. From paintshop you can copy your spectrum to MS word. Make sure...
Hi all, I want to use AutoAssign together with Sparky, especially the Spin Graph Assigner. I did send in the filled license agreement to Montelione's group and...
Hi All, I am trying to get Autoassign, did send in the license agreement to Montelione some time ago, and also sent a mail but don't get any answer.I want to...
Dear all, I am glad to be a new member in this Sparky group. I am even new to Sparky and have some problem in installing sparky. Actually after doing unzip and...
Hi Karthik, Current Sparky versions use Python 2.5 while the error message you posted is from Sparky with Python 2.3 which is very old (installed in ...
Hi Tom, Thank you for your reply, actually sparky was installed in two different places in my computer and now I have rectified the problem. Thank you for your...
Hello, I have a weird bug in Sparky - after assigning a peak there is a problem with the peak label. At certain zoom levels (or ornament label size) the text...
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