Hello Forum, Is there a good way of getting the HSQC images from sparky maintaining the resolution and keeping the brightness for poster/publication. Also I...
I am facing a strange problem. I have made assignment of a protein using sparky. When I open a project containing around 8 spectra and look at assignment table...
Hussan, Syed (NIH/NID...
hussans@...
Feb 3, 2009 11:29 pm
553
... do you use non standard residue names? could be a reason. could you show resonance and/or peak lists at a point that things are still ok according to you. ...
Hi, I want to use relax.py (rh command) for T1 calculation. However the a*exp(b*t) model is not exactly right for T1, so I want to modify the python code for...
Hi Asli, I have modified relax.py for other functions in the past and it does work. One problem with your code is that the parameter_count() routine should...
Hi, Thanks for the help. Now I can get nice fits. I changed the model to a*exp(b*t)+c, and it understood this equation better, for some reason. Now I get good...
Hi Asli, The code assumes that the second fitting parameter (b if you have a,b,c) is the exponent coefficient for purposes of computing the time constant....
Hi, I just re-installed NMRPipe on my macintosh (it was expired). Sparky has been on the mac and is working fine when it come to looking at spectra. However,...
Probably just go back to your cshrc file and give it the path for pipe2ucsf. Also, nmrpipe won't ever expire if you set this environment variable setenv...
hi, yes you need to set the path to pipe2ucsf in the environement variable. also, make sure the pipe2ucsf file has execute permissions. ... (\__/) (='.'=) This...
Ankit, Have you tried entering the specific shift range in the popup you get after typing "pt"? There you may play with other parameters to create the...
Thanks! a ________________________________ From: singletrackmind162 <casey.schlenker@...> To: nmr_sparky@yahoogroups.com Sent: Thursday, February 12,...
Thank you Siva! yes, that is exactly what is was looking for (I was not sure where to set the path). a ________________________________ From: SIVANANDAM V.N...
Hello Forum, Its a more general question rather than one specific to SPARKY. I think this community will surely have an answer to it. I have a NMR structure...
Hi, I'm trying to get comfortable with writing up short python extensions. Right now I've just been working on setting up a uniform view for several spectra,...
Brief description: Sparky crashes any time I press the delete key, regardless of what window or mode is active or how Sparky is started. This makes it a bit...
Of course this was something simple and of course I figured it out moments after posting. Contour_Levels() constructor initializes the "lowest" attribute to...
Even though I said it in a private mail, thanks Tom! This seems to have fixed the problem, and I doubt I'd ever have found it myself. I did figure it had...
... Hi Nik, The relaxation fitting error estimate is a bit weird in that it does not use a noise level estimated directly from the spectrum. Instead it infers...
Hi I have used sparky in fedora 10 system for a long time. at first some minor problem in using sparky in fedora 10 could be circumvented by changing the...
I am getting an error when using bruk2ucsf about not being able to find BYTORDP. I have looked in the 2rr file and I see that parameter listed there in the...
If you read my message, I mention that I checked that the BYTORDP parameter is in the procs file in the format mentioned in that previous message, but it did...
Heya, how are you doing recently ? I would like to introduce you a very good company which I knew. Their company homepage is www.vanigo.com. They can offer...
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