Hi, I'm trying to get comfortable with writing up short python extensions. Right now I've just been working on setting up a uniform view for several spectra,...
Brief description: Sparky crashes any time I press the delete key, regardless of what window or mode is active or how Sparky is started. This makes it a bit...
Of course this was something simple and of course I figured it out moments after posting. Contour_Levels() constructor initializes the "lowest" attribute to...
Even though I said it in a private mail, thanks Tom! This seems to have fixed the problem, and I doubt I'd ever have found it myself. I did figure it had...
... Hi Nik, The relaxation fitting error estimate is a bit weird in that it does not use a noise level estimated directly from the spectrum. Instead it infers...
Hi I have used sparky in fedora 10 system for a long time. at first some minor problem in using sparky in fedora 10 could be circumvented by changing the...
I am getting an error when using bruk2ucsf about not being able to find BYTORDP. I have looked in the 2rr file and I see that parameter listed there in the...
If you read my message, I mention that I checked that the BYTORDP parameter is in the procs file in the format mentioned in that previous message, but it did...
Heya, how are you doing recently ? I would like to introduce you a very good company which I knew. Their company homepage is www.vanigo.com. They can offer...
Hi, I'm looking at a series of HSQC for a titration experiment. I loaded the HSQCs and assigned the first (no ligand) and gave a project name, let say...
Hi Marco, Sparky keeps spectrum peak markers and assignments in a separate file for each spectrum. The project file just contains file system paths to those...
Hi Veal, Peak volumes or heights can be easy to get and accurate or hard and unreliable -- depends what your spectrum is like. Easy if the peaks are not...
Hi, Â I have multiple possibilities when I assign some cross peaks and I would like to keep all the possibilities. The better choice is to pick n times on the...
Hi Larry, The Sparky keyboard shortcuts are defined in the C++ code (command.cc). You could edit them and recompile Sparky but that is a good bit of trouble....
The email handling mangled the code I sent in the previous message. The session.add_command... and lambda... lines have to be indented for it to work....
Hi, I love sparky, but I find it's default directory organization in SPARKYHOME cumbersome, especially for multiple sets of data. Currently, whenever I load...
Hi Nick, The way Sparky expects files in directories with fixed names (Save, Projects, ...) is horrible. That was developed in the early 1990s before Python...
Hi everyone, I'm wondering if there's a way to make the crosshair/reticle in sparky "sticky." In other words, I would like to mark the expected position of a...
Hi all, Is there a standard way to represent negative residue numbers (i.e. a leader sequence) or multiple conformations (e.g. pro isomers or spin states) in...
... not that I know of ... for multiple forms you can use optional lowercap letter in between the resnr and the atomname e.g. A11aHA if I remember correctly...
Dear Dr. Goddard, I am going to perform the side chain assignment of a protein with 230 residues. After the backbone assignment, there are atom names like...
Hi Liwen, Sparky has no batch atom / residue renaming capability. The "rename resonance" dialog (rr) can rename one residue/atom in all peak assignments. But...
Hi Lee, Searching on the web suggests that the missing libX11.so.6 is because you have a 64-bit Fedora Core 11 that does not include 32-bit compatibility...
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