Hi Larry, The Sparky keyboard shortcuts are defined in the C++ code (command.cc). You could edit them and recompile Sparky but that is a good bit of trouble....
The email handling mangled the code I sent in the previous message. The session.add_command... and lambda... lines have to be indented for it to work....
Hi, I love sparky, but I find it's default directory organization in SPARKYHOME cumbersome, especially for multiple sets of data. Currently, whenever I load...
Hi Nick, The way Sparky expects files in directories with fixed names (Save, Projects, ...) is horrible. That was developed in the early 1990s before Python...
Hi everyone, I'm wondering if there's a way to make the crosshair/reticle in sparky "sticky." In other words, I would like to mark the expected position of a...
Hi all, Is there a standard way to represent negative residue numbers (i.e. a leader sequence) or multiple conformations (e.g. pro isomers or spin states) in...
... not that I know of ... for multiple forms you can use optional lowercap letter in between the resnr and the atomname e.g. A11aHA if I remember correctly...
Dear Dr. Goddard, I am going to perform the side chain assignment of a protein with 230 residues. After the backbone assignment, there are atom names like...
Hi Liwen, Sparky has no batch atom / residue renaming capability. The "rename resonance" dialog (rr) can rename one residue/atom in all peak assignments. But...
Hi Lee, Searching on the web suggests that the missing libX11.so.6 is because you have a 64-bit Fedora Core 11 that does not include 32-bit compatibility...
Following your opinion, I wrote the following script. ============================================================ #!/bin/csh if ($#argv != 2) then echo "" ...
The following two scripts works better. 1. gen_rr_list.pl (generate rr.list file) ===================================================================== ...
The following two scripts work better. 1. gen_rr_list.pl (generate rr.list file) ===================================================================== ...
Dear all, I used the oc and op commands to copy a set of assignments between two spectra but I noticed that the new spectrum is shifted in respect to the old...
Hi Marco, I think you want to align the two spectra by shifting the ppm scale with the spectrum settings dialog (st) and then do the ornament copy and paste...
 Hi,  I have a question, hopefully simple.... If I have a cross peak that is possible to assign in several ways, like A vs. B or F vs. G, how I treat him?...
Hi Marco, Sparky doesn't have any explicit support for ambiguous peak assignments. Using multiple markers on one spectrum peak is one approach that has...
Hi Tom, thanks for your help but I don't want to move from Sparky... :)) I will use a single peak marker writing inside the multiple possibilities so...
Hi Martin, There is no capability to copy linewidths from all peaks in one spectrum to peaks another. The ornament copy and paste (oc,op) commands don't copy...
Hi, it seems it is possible but perhaps I have not the right combination of Sparky (I have version 3.113) and Chimera (version 1.2422). Marco ... Da:...
Hi Victor, I tried the Sparky Intel Mac 10.4 version (sparky-mac10.4-intel.dmg) on Mac OS 10.6.1 and did not encounter any crashes. I did find that that Sparky...
From: Victor Jaravine To: Thomas Goddard Date: 11/3/09 12:53 AM ... Hi Victor, I suspect this is a Mac X server issue. Try quitting the X11 server, then start...
Sparky does not accept keyboard shortcuts on Linux Fedora 10 when foreign language input support is enabled: Language Input Utility SCIM (Smart Common Input...
Sparky does not accept keyboard shortcuts on Linux Fedora 10 when foreign language input support is enabled: Language Input Utility SCIM (Smart Common Input...
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