Sorry for the slow response. I've uploaded a script "csi_output.py" to the group (http://groups.yahoo.com/group/nmr_sparky/files/), which runs within Sparky....
Hi Andrew, That's great that you have put Sparky scripts on SourceForge. I have been wondering whether putting Sparky on SourceForge would be of help to...
Hi to all! Now I have a question during peak picking.I wanner autopick peaks with the label numbering 1,2......on each peak.Can sparky do that? Do someone...
Hi JLee, Sparky does not have a command to number peaks 1, 2, 3, ... but here is Python code that adds accelerator "np" to Sparky that numbers the selected...
... <andrewjamesperry2002-yahoo-com-au@...> wrote: hi andrew, ... thanks for postng the script. i've downloaded it, but i still have to try it. i'll post my...
... like this? use an unfolded c13hsqc peaklist to do restricted peakpicking, clean up peak list, run CANDID or ARIA or use the strip plot option to look at...
hi andrew, i was about to test your script, but i can't set up. i copied the suggested lines from the header into my sparky_init.py (attached at the end) and i...
Hi all This is the first time that I write something on this excellent group recently I now running the sparky in Fedora core 4 linux. It seems to work very...
... you can not combine all versions of sparky and chimera see the 'setup' section in http://www.cgl.ucsf.edu/home/sparky/manual/extensions.html#Chimera I...
Hi, I have a series of HSQC spectra that I am using to calculate relaxation parameters for my protein. However, when I use the RH command to integrate the...
RH does curve fitting, not integration, so I hope I am following along alright. If the fitting is being terribly slow, try fitting fewer peaks. If you have...
Hi Tiago, Fitting the decaying exponential A*exp(Bt) to peak heights uses a gradient descent type of approach in the parameter space (A,B). The fitting is...
The trouble is that your Sparky and Chimera programs each include their own Python but are using different Python versions. Sparky and Chimera must use the...
greetings to all, how can i transfer a sparky project between computers? my attempt: copy all the spectra (ucsf-format) and the complete SPARKY directory...
There are path definitions to the save files near the top of the *.proj file (at least in my files). Maybe you need to double check those. Other than, I think...
... now if ... oh yes, there *are* path definitions for the .save files in the .proj file, but they look like ``../Save/HNCO_3D.save'', and since i stuck to...
... ok, i double-checked the path definitions in the .proj file and in the .save files, they are correct. then, i started sparky and tried to open a .save file...
ok, my fault!!!!!! after a long time, i once again stepped into the DOS--Unix file format trap ... nevermind ... after re-saving the .proj and .save files in...
hi,everyone: Now I'm working on dynamics of protein and have many questions! First,sparky can deal with T1,T2 with a seris of 2D spectra and get error without...
I wish I understood this well enough to give a truly outstanding answer, but this is as close as I can get. You are correct that Sparky calculates T1 and T2...
To add to Josh's comments .. <shameless plug> Some new software for relaxation dynamics analysis, by Edward d'Auvergne, has recently come to maturity (it has...
It would certainly be great to have Sparky released under an open source license on Sourceforge. As you say, hopefully this would encourage others to make...
hi to all! Now I'm working on 1H-15N relaxation data,and I found there is difference between the value of RH and curvefit.The former is the python of sparky,...
Hi Jlee, Are you suggesting 10% difference in the rate or the associated error estimate? I did try both programs and if I remember correctly, I got lower error...
Hi JLee, Sparky fits a decaying exponential Aexp(-Bt) to the peak heights using a least squares fit. The sum of the squares of the differences between...
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