I think this may have been covered here before, but Marco is on the right track – you can get to where you need to go by right clicking (control clicking)...
Rino, The bruk2ucsf files, etc. are in the ~/Sparky/Contents/Resources/bin/ which you can get to by right clicking on the Sparky icon, and selecting "Show...
Hi Rino, I don't remember the right way to solve this problem but I think you need to look at the apps, click on sparky, with right mouse button (I think) and...
Hi Rino, I don't remember the right way to solve this problem but I think you need to look at the apps, click on sparky, with right mouse button (I think) and...
Hi everyone. I just tried to install Sparky in a Mac Air machine (Mac OS X Lion 10.7.4). I have actually installed the version sparky-mac10.4-intel.dmg....
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Tom Goddard
goddard@...
May 18, 2012 4:37 pm
The Sparky manual explains this. http://www.cgl.ucsf.edu/home/sparky/manual/extensions.html#CormaSpectrum " This command creates a simulated 2D homonuclear...
Sorry for the late question. I installed Debian, but have problem to compile the newest version. I noticed that version 3.113 is running well with those...
Tom, your hint was bang-on :) I installed the 32-bit binaries for others, see: https://help.ubuntu.com/community/32bit_and_64bit under the last heading (for...
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Tom Goddard
goddard@...
May 9, 2012 6:46 pm
Hi Markus, Linux Sparky is 32-bit. Perhaps your virtual Ubuntu only has 64-bit libraries (libc, libm, X11, ... needed by Sparky). If this is the problem you...
Hello all, I'm on a Ubuntu Virtual Machine under Windoze 7 64 bit. I have an issue with running Sparky. I've downloaded the latest Sparky version...
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Tom Goddard
goddard@...
May 8, 2012 7:14 pm
Sparky is using Python os.fork() to run a stand-alone program peaks2ucsf that comes with Sparky in order to generate the CORMA spectrum. The fork routine is...
Thanks for the help, with the new version, the extension problem has been fixed, but cormaspectrum still can not running well. it is stopped like below ...
The new version did fix that problem, and I can run the extensions from the menu. New questions pop up during the running ... Traceback (most recent call...
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Tom Goddard
goddard@...
May 8, 2012 3:43 pm
Current Sparky versions (3.114 and 3.115) use Python 2.5 which is included with Sparky. Get the current version of Sparky and your problem will be solved....
The problem is I can not load Python extensions directly. My system is windows2008 server, and with sparky copied in the folder C:\Program...
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Tom Goddard
goddard@...
May 8, 2012 12:27 am
The cormaspectrum.py file is not a command-line program. It is part of Sparky code that implements the menu entry Extensions / Spectrum /CORMA spectrum...
Dear all, This is the first time I use this command, but I faced some problem. After I press enter with the command line I got information like below. ...
Dear Friends, Â I am new to doing NMR assignment using Sparky3.1.4 . I processed my 3D HNCA ( 2048x 512x 256 complex points ) and 2D C13HQSC(2048x 512complex...
Try to quit the software for language input. 2012-02-23 zhzhf007 å‘件人： paolo0503 å‘é€æ—¶é—´ï¼š 2012-02-23 10:31:19 收件人： nmr_sparky 抄é€ï¼š ...
Hello, Dear Sparky friends, My name is Wen Chen, I'm a post-doc from Rensselaer Polytechnic Institute. I've been using sparky for a few years now. But today...
Dear sparky users ! The problem is the following, in some of our NOESY spectra c13 and n15 edit the proton dimensions don't have the correct scaling towards...
A single spectrum at 300 ms contains a lot of spin diffusion. It's good to assign DNA/RNA not for constraints. Try to use something like 50 ms instead. Marco ...
Did you do the build up with different mixing time?Jay From: jennig148 <claudia.gerlach@...> To: nmr_sparky@yahoogroups.com Sent: Friday, February 10,...
Hello users, I have a NOESY spectrum of a DNA/RNA strand. I try to get the distance constraints by integration of the NOESY crosspeaks and then converting the...
Hi Srinivas ... this is normally ok, unless you use an exponential window. ... this should be YES in almost all cases I can think of. if it fails to converge...
Hello sparky users , I am using 2D noesy spectrum (H,H) to do structure calculation , while doing peak integration it is showing errors as follows . Linefit...
just use command "pt" and save them as a .ps file.  you will get what you need. But I noticed that under some circumstance, it does not work well under...
