Many thanks!!! I will try. Marco Dr.Marco Sette, Ph.D. Department of Chemical Sciences and Technology University of Rome, "Tor Vergata" via della Ricerca...
860
werkawi
Oct 22, 2012 5:01 pm
861
ldfinger
Nov 20, 2012 1:02 pm
Hi everyone. I have recently decided to start using Sparky and the MARs server for assignment for reasons I do not want to get into right now, but would love...
862
charles_stevens@...
charles_stev...
Dec 11, 2012 10:20 pm
I am having trouble with importing two 3D spectra into sparky. when I open the processed (h(cco)nh & cc(co)nh) data in nmrDraw, the files look great, but after...
863
Do, Quynh Hoa
hoa_ibt
Dec 12, 2012 6:37 pm
Hello Charlie, Did you check again other part of your macro? Here is the code that I used to convert Pipe format to UCSF format. It works and gives nice...
864
zamorach
Dec 12, 2012 7:19 pm
Hello! Today I've runned Sparky in Windows 7 for the first time and I've encountered a problem. When I try to open the files I've been working with in other PC...
865
charles_stevens@...
charles_stev...
Dec 12, 2012 9:18 pm
Hello Andrew and Hoa, Thank you for your replies. I have tried both methods that you had suggested and the result is the same as what I was getting from my...
866
Do, Quynh Hoa
hoa_ibt
Dec 13, 2012 11:38 am
Hello Charlies, I have a look at your macro and wonder why you need to use FT and SP for z dimension 3 times of each? Once, by mistake I used 2 times for FT...
867
Andrew
afowler13
Dec 13, 2012 4:28 pm
Hi Charlie, I had figured you probably had converted other spectra using the same method, but it was worth a shot. In any case, I've had a look at your...
868
charles_stevens@...
charles_stev...
Dec 13, 2012 10:22 pm
Hi Andrew & Hoa, Thank you for your replies, I am still fairly new to NMR, and have a ways to go before I understand it completely, and I really appreciate...
869
thakurabhay29
Jan 18, 2013 2:44 am
Hi all, Although it sounds silly, but the arrows (you can see as elongated triangle) connecting peaks and their labels in Sparky sometimes mess up the whole...
870
Martin Ballaschk
ballaschk@...
Feb 8, 2013 5:25 pm
Dear Sparky users, after assigning a protein in CCPN I want to move the NH/N assignment of my "root" spectrum (HSQC) to Sparky. What does it need for that? *...
871
nichtverstehen
Feb 8, 2013 6:19 pm
That peak list looks close to what Sparky will want. The only problems you might have is that Sparky will expect w1 to be 15N and w2 to be 1H, which is more of...
872
Martin Ballaschk
ballaschk@...
Feb 8, 2013 6:19 pm
I found the rp function ... nevermind my question. Now I have some referencing problems, but that should be easy to fix. ... -- Martin Ballaschk AG Schmieder ...
873
Martin Ballaschk
ballaschk@...
Feb 8, 2013 10:13 pm
Hi Kari, thanks for the help. There is some flexibility in the CCPN export routines, and I could easily reverse the order of the column. Now after using "rp"...
874
nichtverstehen
Feb 8, 2013 10:23 pm
You're welcome. When you open Sparky there should be a "Pointer mode" window that pops up. There are shortcuts for each of the modes using the Function keys on...
875
Tom Goddard
goddard@...
Mar 9, 2013 7:57 pm
Hi Aikaterini, I installed XQuartz version 2.7.4 on my Mac OS 10.8 (Mountain Lion) machine http://xquartz.macosforge.org/landing/ and Sparky 3.115 ran without...
876
Tom Goddard
goddard@...
Mar 15, 2013 6:29 pm
Hi Santosh, Sparky uses the fonts specified near the top of the resource file sparky/lib/Sparky The menus would probably be the "normalFont" specified as...
877
Ravi
ars5913
Apr 4, 2013 5:58 pm
Dear Tom How did you solved the space problem of Sparky 3.115 in defining the path. I have installed sparky but when I type the command sparky in terminal it...
878
Tom Goddard
goddard@...
Apr 4, 2013 6:08 pm
Hi Ravi, I start Sparky on the Mac by double-clicking the icon. I can start it from a terminal like so /Users/goddard/Desktop/Sparky\...
879
Marco Sette
m77it
May 7, 2013 8:19 am
Dear all, I just got sparky on a laptop running ubuntu12.04 but, after unpacking and moving to the bin directory the command sparky says sparky: Command not...
880
Martin Ballaschk
ballaschk@...
May 7, 2013 5:48 pm
Hi Marco, did you try to run sparky directly from the directory you put it in? e.g. cd /usr/local/sparky/bin/ (or whereever you put sparky) ./sparky So if...
881
Marco Sette
m77it
May 7, 2013 6:41 pm
Hi Martin, I forget the "./" ............ Now everything works!!! :) Thanks for your help Marco Dr.Marco Sette, Ph.D. Department of Chemical Sciences and...
882
pancham
kandiyal_mpharm
May 9, 2013 4:22 pm
Dear sir/Madam, I am a sparky user and using this software for 2D NMR assignment....I used this software many time...I am facing a problem in ucsf file of 2D...
883
Marco Sette
m77it
May 9, 2013 6:33 pm
Hi Pancham, did you check the acquisition parameters you used to record the spectrum? Best, Marco Dr.Marco Sette, Ph.D. Department of Chemical Sciences and...
884
Mandar Naik
mantrinaik
May 10, 2013 5:19 pm
Hi, Additionally, please post the output of ucsfdata program, which you can find in the bin folder of Sparky installation. Something like, ucsfdata TOCSY.ucsf...
885
Yala
jarmadushanka
May 13, 2013 5:55 am
Hi All, I am new to Sparky. I am trying to use NCO, NCACO and NCOCA spectra to get assignment for protein structure. If anybody has proper instruction to do...
886
Demers, Jean-Philippe
jpdemethyl
May 13, 2013 5:55 am
Hello Pancham, You can apply a chemical shift correction to your TOCSY spectrum using your ROESY spectrum as a reference: - First, do the peak picking of a few...
887
Mandar Naik
mantrinaik
May 13, 2013 5:28 pm
Hi, His problem was in the nmrPipe processing script and has been resolved. According to me (after having seen his data), what you have suggested would not...
888
Marco Sette
m77it
May 18, 2013 11:30 am
Hi, when I use the sp command with HNCO (and HNCACO) and HNCA (and HNCOCA) the strips are not contiguous since the C13 chemical shifts are very different. Is...
