Oh I have completely forgotten the pivot. Thanks for reminder. To share my further experience: multiple POLY functions blur my data, so I just use one POLY to...
2496
zebullita
Dec 2, 2012 6:07 pm
Hi, I'm currently using Dynamo to evaluate molecular structure according to noe restraints. I've modified some of the scripts provided (pdb2dyn.tcl,...
2497
Frank Delaglio
bigfdelaglio
Dec 3, 2012 4:04 pm
If you want to extract a subset of information in an NMRPipe format table, you can use the various scripting tools intended for that purpose. In particular,...
2498
Michael Latham
mpl9700
Dec 19, 2012 5:53 pm
Hi, I am using peak volumes from "fully relaxed" 2D correlation spectra to quantify populations in a slowly exchanging system. Is there a way to get an error...
2499
tomas5122
Dec 24, 2012 10:49 pm
Dear nmrPIPE comunity I would like to ask you for help with my problem. I'm trying to replace defective points in 3D spectrum. I can not use LP because...
2500
delaglio@...
bigfdelaglio
Dec 24, 2012 11:10 pm
Probably lots of ways to do this, even ways without splitting up the data. For similar NUS tasks, I usually work with an NMRPipe-format mask file of ones and...
2501
tomas5122
Dec 28, 2012 8:23 pm
Thank you It helped...
2502
Malgosia
mgosia
Jan 7, 2013 8:29 pm
Dear Pipe users, I have the same problem as Kate: heavy baseline distortions in the acquisition dimension in the methyl region of some of my 2D and 3D noesys. ...
2503
santhosh_karunakaran
santhosh_kar...
Jan 8, 2013 11:54 pm
Hello all, I added some identical 3D data using addNMR. In order to be sure, that the data has been added, after adding, i checked the max and min of the first...
2504
yangqi@...
yangqi...
Jan 8, 2013 11:55 pm
Dear nmrPipe users, I used a pulse program called "hsqcetgpiasp" on a 700MHz Bruker NMR spectrometer to colloect HACA RDCs. When I'm processing the data, I...
2505
bigfdelaglio
Jan 10, 2013 5:02 am
The processing to use depends on whether the IP/AP interleaving loop is the innermost one in the pulse sequence. If it is, we have to separate the IP and AP...
2506
bigfdelaglio
Jan 10, 2013 5:02 am
If the phases of the data are not the same, signals will partially or completely cancel if you add the data directly in the time domain without any other...
2507
bigfdelaglio
Jan 10, 2013 5:03 am
Bruker needs to have good baseline correction facilities in their software because their acquistion methods result in such badly distorted baselines. That...
2508
Malgosia Duszczyk
mgosia
Jan 11, 2013 7:25 pm
Thanks Frank! ... Not much to do about that then as bruker machines are the only ones at my disposal :) ... This actually does improve the distortions (but not...
2509
bigfdelaglio
Jan 11, 2013 7:45 pm
Ok, one more trick, hope it helps! For a given vector-based nmrPipe processing function, you can select which vectors from the data are passed to it, and which...
2510
yangqi@...
yangqi...
Jan 17, 2013 3:00 am
The IP/AP interleaving loop is the innermost one and the script works. Thank you so much! Yang...
2511
arpit_katiyar70
Feb 1, 2013 6:14 am
2512
Weidong Hu
lakesu
Feb 11, 2013 8:39 pm
Dear nmrPipe users, Â We just installed a new Bruker 700 with NUS package. A user collected a 3D data set, but could not process the data since the MDD...
2513
annawright_1982
Feb 14, 2013 3:26 pm
Hello, following execution of install.com, I receive an error message: failed to find software directory nmrbin.linux9 I specifiy the base directory as...
2514
mattjwoa
Feb 19, 2013 9:26 pm
Hi Weidong, nmrPipe does not have MDD functionality to my knowledge, but it does have the capability of reconstructing spectra from non-uniformly sampled NMR...
2515
sette@...
Mar 5, 2013 11:21 pm
Hi all, I have a 3D acquired with Topspin 3.1 using 64 x 64 points for N15 and C13 reduced both to 25% with NUS. The strange thing happens with bruk2pipe that...
2516
Matthew J. Whitley
mattjwoa
Mar 6, 2013 8:28 pm
Hi Marco, I too was confused at first that the bruker-->pipe conversion macro wasn't getting the details of the acquired data correct when the data is acquired...
2517
bigfdelaglio
Mar 7, 2013 3:50 am
Hi All, Just as an added note, the latest NMRPipe schemes for 3D NUS data start by converting the FID as a 2D file, but with parameters filled in for all three...
2518
sette@...
Mar 7, 2013 7:30 am
Hi Matthew, thanks for your explanation. I used my own script to convert the 2D conversion file in a 3D conversion file but now is much more clear to me what...
2519
bigfdelaglio
Mar 21, 2013 4:40 am
Dear Colleagues, I have an opening for a 2-year post-doctoral position in the area of development and application of NMR spectroscopy to proteins. Please find...
2520
Michael Latham
mpl9700
Mar 26, 2013 4:37 pm
Hi everyone, I am using peak volumes from fully relaxed HSQC spectra to get populations in a three-site slowly exchanging system. I am using nlinLS to get the...
2521
krystala110
Apr 3, 2013 8:38 pm
Dear colleagues, I collected a T1 pseudo3D experiment containing 10 delays specified in the vd list. The data was collected using the loop set-up below. goscnp...
2522
adschuyler
Apr 11, 2013 3:55 pm
Hi fellow nmrPipe users, I've run into an unexpected situation. The details are below. Thanks in advance for any suggestions. This is what I'm doing: 1) A...
2523
aswanikumar
ashwin2952
May 6, 2013 9:16 am
Hello NMRPipe Community, I have a 3D data set (modified HNCO experiment for detection of Hydrogen bonding partners) wherein the reference and the H-bond...
2524
Siddhartha P Sarma
sidd@...
May 6, 2013 9:17 am
Dear Colleagues, I have just acquired an interleaved 3D HNCO experiment on an Agilent (Varian) 600 MHz instrument. I would be much obliged if anyone of you...
