Hi there, The acqsition mode in the 15N dimension could be different. Try the acquisition mode to be "Echo-AntiEcho" instead of "States-TPPI" and don't apply...
Sarata Chandra Sahu
scsahu@...
Nov 4, 2006 11:01 pm
1368
Hi, I've looked at both pulse sequences and you can only do States-TPPI or TPPI so don't try processing them as Echo/AntiEcho and you should not need to do any...
Hi, I tried to process a simple Bruker Topspin 1H-15N HSQC dataset using the recent version of NMRPipe with the header for the file produced using 'bruker'...
You may want to explore deeper into why the data has this information to start with. The "wings" on your spectra are known. I would suggest that TopSpin...
You can thank Bruker for this feature, since they don't adjust for oversampling "automaticallly" during acquisition, as for instance is done on a Varian. That...
Dear All I am sorry to bother you with this non-nmrPipe question: can anyone suggest a FREE software similar to Accelrys Discovery Studio that can be used for...
Hi, for an non-nmrpipe question, a non-mailing listed answer: it depends on what your purpose is, basically. Is it a protein ? Ok, if you have a sequence...
Dear Lei, Nice question. Sorry I don't have an answer, but am also very interested in this as we don't have the funding to pay Accelrys... If you would be so...
Brian Cutting
Brian.Cutting@...
Nov 18, 2006 12:28 pm
1375
Hi, The -AMX flag seems to be doing the job pretty well - there seem to be no visual difference between the bruker-processed data & the NMRPipe-processed one. ...
Dear all, I acquired a TROSY-chemical exchange dispersion using gNcpmgex.c varian pulse sequence. But I am unable to phase indirect dimension very well using...
Hi everyone This request has been posted before, but I have seen no repsonses. Does anyone have scripts that allow you to stack a series of 1D spectra and...
... Take a look for Ghemical http://www.uku.fi/~thassine/ghemical/ -m-...
Maria Pinjanainen
mpinjana@...
Nov 21, 2006 7:53 pm
1380
This post is like some other posts that are strictly nmrpipe related. I am in need of a script that calculates from a pdb file a H-H distance list (say, < 5A)...
here's a dumb little script, which assumes that the segment names of any ligands are different from the protein ... it lists all H-H distances below the bound;...
I'm using an experiment similar to those in JMR (1999) 136, 92-101 and I don't seem to be getting the same sensitivity improvement that I should be according...
Hello all, I am a new nmrPipe user, just learning my way around the program and UNIX. When I attempt to extract the sample ACME files and scripts from the...
AHOY!!! Ok, try using "ls -l" to make sure that the file is actually there ... it may be that the web browswer you used to download the file decompressed it...
Hi I have recently acquired a HNCO with 64 increments along CO dimension. I'd like to compare it to another result which only uses 32 increments along CO...
Hi, fellow Pipers! I've got data acquired with Bruker's TopSpin 2.0 and can't get it converted into NMRPipe format (DQD for direct dimension). The values for...
Hello All, I'm trying to phase a HNcoCA I acquired recenly but I have a problem to phase the 13C dimension: The AQ order is made in the way that the 13C...
The remedy is, download the recent version of NMRPipe. Rumor has it that the download fairies have already sent Prof. Ruth the needed info ... HUZZAH!!!...
Dear Colleagues, S.V.B.E.V., The first XZ plane in an NMRPipe FID corresponds to the first **real** point in the Y-Axis. So, if the Y-axis has a 90 or -90...
Greetings all, I was wondering if anyone could recommend a book or web tutorial to help me become proficient in UNIX at a level appropriate for using nmrPipe. ...
Greetings fellow ACME users! I have at long last been sucessful in running ACME on my Mac (OS X 10.4) and have been successful in obtaining many coupling...
Hi folks, Does anyone know how to setup the use of a skewed sinebell function in NMRPipe? Also, how would one go about performing the Fourier transform on the ...
I'm not an expert, but I believe you use fn -TP to switch dimensions (this transposes you to the indirect dimension - you can use another fn -TP to go to the...
Dear all, I am a trying to fit Ha-Ca doublets in a Ha-coupled (HA)CA(CO)NH 3D expt. I have created a 3-D peak pick file and have used autoFit.tcl for fitting. ...
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