Hi folks, Does anyone know how to setup the use of a skewed sinebell function in NMRPipe? Also, how would one go about performing the Fourier transform on the ...
I'm not an expert, but I believe you use fn -TP to switch dimensions (this transposes you to the indirect dimension - you can use another fn -TP to go to the...
Dear all, I am a trying to fit Ha-Ca doublets in a Ha-coupled (HA)CA(CO)NH 3D expt. I have created a 3-D peak pick file and have used autoFit.tcl for fitting. ...
HUZZAH!! Thanks for taking the time to provide some info for all of us, Tom. Here is some additional stuff ... Cheerful Regards and Happy New Year, big fd ...
Greetings all. An ordinary 3D fit looks like this: autoFit.tcl -specName ft/test%03d.ft3 -inTab test.tab It will produce: nlin.tab: a "refined" version...
oo, one more thing ... a nice way to evaluate the 3D fit is via a strip view of the three spectra, observed, simulated, and difference ... in the case, the...
Hi, Happy new year to all the pipe users! Is it possible to generate a postscript file of the overlayed HSQC/TROSY spectra using the script "view2D.tcl"? The...
Sarata Sahu
scsahu@...
Jan 8, 2007 10:15 am
1401
There should be a tcl script in your NMRPipe/com directory called plot2.tcl for overlaying two 2D data sets. You can get at least a simple overlay, but I don't...
I am trying to measure some precise coupling values from a indirectly coupled HSQC spectra (13C-H). I have a pipe script which can extract 1d slices of the two...
Greetings, fellow Pipers - I am attempting to fit my diagonal amplitude with ACME. However, when I pick a peak (or peaks) and click "Fit," the Simulation and...
Frank, Is it ok to use chemical shifts referenced to DSS (and indirect referencing for 13C, 15N based on their gammas) when using TALOS or do you recommend...
PONNI RAJAGOPAL
ponjan@...
Jan 13, 2007 3:39 am
1405
Ponni You need to use chemical shifts referenced to DSS - Indirect referencing for 13C and 15N is fine Best Valerie...
Dear All I have a a question that may sounds weird: by using nmrPipe to process a 1D Bruker spectrum, is there a way we can do to make the resulted spectrum be...
Thank you for your advice. Do I need to install sparky to run this command? Because after I tried, it tells me " pipe2ucsf: Command not found ". ... ...
Hello, I'm trying to use the autoFit.tcl program on the 2D slices of an interleaved spectrum. It's doing an excellent job on the first slice, but all the rest...
In order to fit a pseudo-3D with autoFit.tcl: 1. The 2D planes need a systematic series of names like the usual NMRPipe 3D, for example ft/test001.ft2...
Hi. I am using nmrPipe to process data and calculate volume change of cross peaks for H H exchange of protein. I found out that volumes of cross peaks could...
I can see this (NMRDraw: No File current) when i try to convert my Bruker data and when i click convert Bruker nothing happens. Can anybody suggest whats going...
Dear All I have two 1D spectrum and I want to substract one from another. Can I do this in nmrPipe? Should it be done in frequency domain (spectra) or time...
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... Hi You can use the addNMR command either way. but as F pointed out (check archives) the phasing may be different between the two). For example you can add...
Dear Colleagues, Exciting news, we have an experimental version of NMRPipe for Windows XP Professional Edition (HUZZAH!!!) This new version is posted with the...
way cool, Frank. I'd like to point out that one "safe" way to run experimental extensions such as SFU on MS-XP is to invest in a virtual environment and then...
Thank you very much! ... ____________________________________________________________________________________ Need a quick answer? Get one in minutes from...
dear pipers, i am having the same problem as mike osborne in 2005: -- HI Frank I have been trying to look through the dosyView.tcl script to help analyse my...
christiane riedinger
christiane.riedinger@...
Feb 2, 2007 6:23 pm
1420
Hi Christiane You can ask it to run a file containing the gradient strength (well, G^2delta^2 etc) directly include them.. ... #!/bin/csh ... #| nmrPipe -fn...
Ahoy!! Have a look at: dosyView.tcl -help fitXY.tcl -help The "dosyFit.tcl" script is a crude little application to fit selected lines from a 2D DOSY to a...
HUZZAH!! 3 cheers for Mike O ... one little change is needed perhaps ... ... this should probably be (note the removal of one "-"): dosyView.tcl -tau `cat...
Hello, I'm trying to get my configurations streamlined and I've noticed that with default settings, nmrPipe, Aria2.1 and CCPNMR don't like to play with each...
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