Thank you very much! ... ____________________________________________________________________________________ Need a quick answer? Get one in minutes from...
dear pipers, i am having the same problem as mike osborne in 2005: -- HI Frank I have been trying to look through the dosyView.tcl script to help analyse my...
christiane riedinger
christiane.riedinger@...
Feb 2, 2007 6:23 pm
1420
Hi Christiane You can ask it to run a file containing the gradient strength (well, G^2delta^2 etc) directly include them.. ... #!/bin/csh ... #| nmrPipe -fn...
Ahoy!! Have a look at: dosyView.tcl -help fitXY.tcl -help The "dosyFit.tcl" script is a crude little application to fit selected lines from a 2D DOSY to a...
HUZZAH!! 3 cheers for Mike O ... one little change is needed perhaps ... ... this should probably be (note the removal of one "-"): dosyView.tcl -tau `cat...
Hello, I'm trying to get my configurations streamlined and I've noticed that with default settings, nmrPipe, Aria2.1 and CCPNMR don't like to play with each...
AHOY!!! Ok, "don't like to play with each other" is maybe not the most specific way to describe the problem, so I can't offer a specific answer for sure. In...
Hello, Thanks Frank, that did it. The most recent version of nmrpipe works with Aria2.1 and CCPNMR Analysis with a single .cshrc file, with some small...
Dear all, When I process Varian data, I use a macro (e.g.: | nmrPipe -fn MAC -macro $NMRTXT/ranceZ.M -noRd -noWr ) immediately after the arguments of...
Hi there, You only need the ranceZ.M when processing raw sensitivity-enhanced data. This can more easily be taken care of in the fid.com conversion script...
Dear Colleagues, I am trying to determine amide pKa from chemical shift titration of 15N. Does nmrPipe have a way to do the curve fitting to extract the pKa...
dear Weidong, ... Do you really mean the pKa of protein backbone amides? Or do you mean to use backbone amides as reporters of nearby charged side chains (in...
Hi, concerning xmgr: the descendant of XMGR seems to be Grace; you can download at http://plasma-gate.weizmann.ac.il/Grace/ Bye, Marco ... Dr.Marco Sette,...
sette@...
Feb 13, 2007 4:35 pm
1431
Dear Marco, Thank you for providing me this information. I already downloaded grace 5.1.20. I think it should be good enough for my purpose. Best wishes, ... ...
I'm a new nmrpipe user I'm trying to determine the noise in 1D spectrum. Is there any function to find out the noise level or how I can find out. Regards ...
Greetings all, NMRPipe includes a general-purpose XY fitting script called "fitXY.tcl", which includes estimation of fitted parameter errors via Monte Carlo...
Ahoy!! There are a few ways, and the automated methods tend to be better for 2D/3D then they are with 1D, depending on the nature of the spectrum. 1....
Dear All Does anyone know if we can get the 1D spectrum (F2 or F1 dimension, which can be saved as .ft1 ) from a 2D (or even 3D) fid ? Thank you! Lei ...
Dear all, I am a new NMRPipe user , please tell me some how to convert a test.ft file to UCSF fomat ,which is required for SPARKY ...... parichita Parichita...
There are several ways to extract 1D data, here are two: INTERACTIVE: From inside "nmrDraw", if you are viewing a 1D from any dimension, you can save it this...
From a UNIX terminal, type: pipe2ucsf test.ft test.ucsf (test.ucsf is the new file, and you can give it any name you wish as long as the extension is ucsf)....
Parichita Go to the directory where sparky is loaded in DOS mode and type bruk2ucsf if you have bruker data or vnmr2ucsf if you have varian data. This worked...
Dear All, I am not sure if i did it right. but it seems that my Pipe doesn't work very well for SOME topspin data. For example, it works well for 2D HSQC, but...
Hi, I am having problems with the fonts for scroll.tcl. I am using Ubuntu (dapper). The HN ppm labels for each strip are huge, and offset wrong. I initiate...
Ah, how sad. Let's see what can be done. 1. There are no arguments "-scale" "-type1" and "-type2" for "scroll.tcl". These are arguments for "nmrDraw". Try ...
... Oops, that was a line I added just to try, and since it did nothing, forgot to remove it. ... With the scale arguments, it works perfectly. Without the...
I love a thorough reply! Our young colleague here deserves a solution just for that. Anyway, these font choices are currently "hard wired" into the software,...
Dear all, I run NMRPipe on my PC (Red Hat Linux 9 on x86). Recently, I've found that some people use the "-swap" option for "var2pipe". var2pipe -in ./fid...
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