Hi, I am having problems with the fonts for scroll.tcl. I am using Ubuntu (dapper). The HN ppm labels for each strip are huge, and offset wrong. I initiate...
Ah, how sad. Let's see what can be done. 1. There are no arguments "-scale" "-type1" and "-type2" for "scroll.tcl". These are arguments for "nmrDraw". Try ...
... Oops, that was a line I added just to try, and since it did nothing, forgot to remove it. ... With the scale arguments, it works perfectly. Without the...
I love a thorough reply! Our young colleague here deserves a solution just for that. Anyway, these font choices are currently "hard wired" into the software,...
Dear all, I run NMRPipe on my PC (Red Hat Linux 9 on x86). Recently, I've found that some people use the "-swap" option for "var2pipe". var2pipe -in ./fid...
This is from the bruk2pipe/var2pipe manual page: -swap or -noswap: depending on the computer platforms involved, spectrometer format data may require each four...
Dear Frank, Thank you very much! Following what you mationed, I've tested these four options with a cbca(co)nh spectrum acquired on Bruker AVANCE 500 MHz...
Hi, I have a 2D spectrum "test.ft". I need to extract 1D pojections along x-axis and y-axis. Which is the command in nmrPipe to get the projections. thanks nrs...
Dear All, We would like to announce our 7th annual national training course. The course this year will cover 6 days of lectures and hands-on training. When:...
proj2D.tcl -in test.ft The input spectrum should have unique axis names, as established during conversion via "-xLAB" and "-yLAB" ... % proj2D.tcl -help ...
From Frans A.A. Mulder: Biomolecular NMR - Post-doc position at the University of Groningen, the Netherlands A full-time post-doctoral research position is...
Dear All, I want to overlay two 1D spetrum and save it as a .ps file using "Hard Copy Plot" command. What I did is: In nmrDraw, load the first 1D spectrum...
Dear all, I was using the scripts generated by "bruker" command to convert my 3D data files, and somehow got some problems about the size of the data. My ...
Jun Cai
juncai@...
Mar 29, 2007 6:20 pm
1456
I had a problem when processed bruker topspin2.0 version 2DNOESY in NMRpipe. Is it NMRpipe not recognise topspin? The header of fid.com says the follows, -bad...
Hi all, I am a new user of nmrpipe and I am trying to analyze some residual dipolar coupling experiments. I ran IPAP 15N-HSQC experiments. So far I have been...
Dear all, I have a 13C NOESY-HSQC spectrum, whose dof value was wrongly setted. Originally, I want to set the carrier frequency of C13 to 43.000 ppm ...
Maybe I am wrong, but I don't think CS, RS, or LS will solve your problem. If you do these in the time domain, it can only affect the phase of the spectrum. If...
I would use CS in the in the frequency domain, i.e. after Fourier transformation in that dimension. This shifts your spectrum correctly. Just add this line...
Patrik Lundström
patrik.lundstrom@...
Apr 5, 2007 3:57 am
1462
Greetings, Colleagues! Preeti is correct, the script "ipap.tcl" is intended to help extract coupling distances from pairs of IPAP spectra. Once you have tables...
AHOY!! Ok, about shifting data: The commands LS RS and CS (left shift, right shift, circular shift) can only shift data by an integer number of points. So,...
Hi, I remember reading somewhere in the man pages that nlinLS can integrate a defined box around a peak, and not perform any fitting. Could someone point me to...
If you supply some more details, either to the mailing list or directly to me, we can perhaps show a specific example ... There are not too many cases where...
dear all, when i use nmrPipe to process fid, i usually find the phase for direct dimension by using nmrDraw, that is: read in the test.fid, open the "first"...
AHOY!! Whether the "first" or "second" slice of an FID will be most useful for inspection depends on the phase correction in the indirect dimension. The...
Hi Frank Thanks a lot for adding me to NMRPipe mailing list. I have a problem processing a cbcanhgpwg3d experiment recorded on a Bruker Avance 800. The problem...
Ahoy, Other who have used this exact pulse sequence can probably comment more exactly ... my comments: 1. I guess that this is a gradient experiment, so you...
I came across the same problem. Here is what I found out after numerous trial: -nl mode was used. Basically you specify the points on your 1D spctrum on the...
Just a quick note on the message I posted previously. Two points are needed to specify a region in the 1D spectrum, say, ... This means that you want to apply...
Thanks for the notes, Xiaohu ... here are some more notes ... POLY fits specified points from each vector to a polynomial, and subtracts the fitted result from...
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