I had a problem when processed bruker topspin2.0 version 2DNOESY in NMRpipe. Is it NMRpipe not recognise topspin? The header of fid.com says the follows, -bad...
Hi all, I am a new user of nmrpipe and I am trying to analyze some residual dipolar coupling experiments. I ran IPAP 15N-HSQC experiments. So far I have been...
Dear all, I have a 13C NOESY-HSQC spectrum, whose dof value was wrongly setted. Originally, I want to set the carrier frequency of C13 to 43.000 ppm ...
Maybe I am wrong, but I don't think CS, RS, or LS will solve your problem. If you do these in the time domain, it can only affect the phase of the spectrum. If...
I would use CS in the in the frequency domain, i.e. after Fourier transformation in that dimension. This shifts your spectrum correctly. Just add this line...
Patrik Lundström
patrik.lundstrom@...
Apr 5, 2007 3:57 am
1462
Greetings, Colleagues! Preeti is correct, the script "ipap.tcl" is intended to help extract coupling distances from pairs of IPAP spectra. Once you have tables...
AHOY!! Ok, about shifting data: The commands LS RS and CS (left shift, right shift, circular shift) can only shift data by an integer number of points. So,...
Hi, I remember reading somewhere in the man pages that nlinLS can integrate a defined box around a peak, and not perform any fitting. Could someone point me to...
If you supply some more details, either to the mailing list or directly to me, we can perhaps show a specific example ... There are not too many cases where...
dear all, when i use nmrPipe to process fid, i usually find the phase for direct dimension by using nmrDraw, that is: read in the test.fid, open the "first"...
AHOY!! Whether the "first" or "second" slice of an FID will be most useful for inspection depends on the phase correction in the indirect dimension. The...
Hi Frank Thanks a lot for adding me to NMRPipe mailing list. I have a problem processing a cbcanhgpwg3d experiment recorded on a Bruker Avance 800. The problem...
Ahoy, Other who have used this exact pulse sequence can probably comment more exactly ... my comments: 1. I guess that this is a gradient experiment, so you...
I came across the same problem. Here is what I found out after numerous trial: -nl mode was used. Basically you specify the points on your 1D spctrum on the...
Just a quick note on the message I posted previously. Two points are needed to specify a region in the 1D spectrum, say, ... This means that you want to apply...
Thanks for the notes, Xiaohu ... here are some more notes ... POLY fits specified points from each vector to a polynomial, and subtracts the fitted result from...
Thanks all for generous help! However i am still struggling to get anything from NMRPipe, the good news is i manage to get rid off the "vertical lines". But i...
Greetings, Have you tried the NANUC processing script library? ...
Norma H. Pawley
npawley@...
Apr 25, 2007 8:30 pm
1475
Dear friends I am new to this community and also new to this nmrpipe.i installed nmrpipe in Suse10.0.if i give bruker command,i am getting error. I dont know...
Dear All, I have a acquired a 2D NOESY using 1364x800 points. I am able to process the data in vnmrj, but it gives a size error when I try to convert it to ...
Dear Roberto, I would first check the log file to make sure your 2D experiment did complete, i.e. all 800 fid were recorded. I would guess that it stopped ...
I'll bet Yves is absolutely right. Typically when I see this error it's due to a "FIFO underflow" or manually halted experiment. The log file in your...
I am just curious: let's say, for a 2D experiment, we recorded 800 fid, bur for some reason I only want the first 400 fid. How can I do that? I tried to edit...
hello, thanks for all replies to my previous question. By the way, varian Biopack brings the possibility to record several experiments using projection...
dear all, I am using "view2D.tcl " to overlay two 2D spectra. I ahve several questions: 1. can I export the overlayed spectra as a .ps file? 2. can i turn off...
You can use the tcl script plot2.tcl which should be in your nmrpipe/com directory. You will have to: change the file paths for the two data sets; change the...
We recently installed Topspin 2.0 in our lab and are trying to take advantage of some of the Bruker experiments that we have never done before. However, the...
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