Hello Andrew: Thank you very much for your help. Now I can do Magnitude FT. I am using the pulse sequence "HMBC" from the Varian Lib. If I use the array "Phase...
I'm not an expert on Varian pulsesequences, so I hope someone else on the list can help you. My last job was writing pulsesequence so I never used the standard...
Hello: The error messages that I got during transformation is shown as this: armstrong 134% ph2.com File Status Notice: Value too large for defined data type ...
Hi there...not sure if this may help. If you check out the previous posts and look for "HMBC idiot" (refering to me not you) you should find out 2 ways of...
AHOY!!! greetings from friendly BASEL SWITZERLAND, and the EMBO ... now, about magnitude-mode processing ... ... actually: there are only one set of real and...
delaglio@...
Jul 8, 2007 12:18 pm
1520
Hi all This time I wanna have your opinion about the linear prediction Recently I got the HNCO and HNCACB spectrum. Both of them looks good when they were...
oh my! there are numerous mistakes in the scheme. why are you scaling the first points of the FID with -c .33 or -c .66? this will introduce a baseline...
Hi, When running the "bruker" script to set up fid.com, I'm getting a divide by zero error. The experiment is the Yang et al. (1999) 3d trosy-hnco 1D(HN)...
How embarassing! Well, as far as I knew, if an IN parameter is used, it had to be non-zero. Ah well. Perhaps adding "if {$i == 0} continue" at two places in...
delaglio@...
Jul 11, 2007 8:34 am
1524
I am running nmrpipe on a new 2x2Gz dualcore Mac with OSx version 10.4.10. I am trying to parallel process data on my 4 processors using the nmrShell command....
I am working on fitting 2D relaxations series in NMRPipe (using Gabriel Cornilescu's tutorial as a guide) but I come across when trying to run the fit.com...
oo! Ok, the "difName" in this case should be a template name, not a 2D file name "dif.ft2" ... so, something is not quite right. You can try to put explicit...
delaglio@...
Jul 16, 2007 2:48 pm
1527
On a single multicpu machine, you can get around the need for rsh connections. Have a look at the script "com/nmrCsh" ... it is a "low budget" version of...
delaglio@...
Jul 16, 2007 3:16 pm
1528
I am working on a program which requires one fid file and nmrPipe peak table as input. Now I have a 2D spectrum which was processed in both dimensions using...
You can keep the imaginary data in the indirect dimension by simply leaving out the option to delete imaginaries "-di" which is usually added to "FT" or "PS". ...
delaglio@...
Jul 20, 2007 1:44 pm
1530
Thanks,Delagio, Sure, I can share that. The program I am using is Xrambo (developed by Dr. Prestegard's group). Xrambo is a program based on Monte Carlo...
Hi everybody, I would like to ask help with processing of hCCH-tocsy and HcCH-tocsy acquired with topspin2.0! I can process the spectra with topspin but i am...
Ok, that makes sense. There might be better ways to fit this data, feel free to send an example to me directly if you'd like some comments. About HT schemes,...
delaglio@...
Jul 23, 2007 1:10 pm
1533
Hi simona, I've look at your script and it look just fine. I have succesfully processed a 3D-hcchtocsy with a Bruker 600/Topspin 2.0. I suggest you try my...
just a couple of comments ... 1. About zero fill: lots of examples people send me use an explicit zero fill size, like "-size 1024" ... in the example below, ...
delaglio@...
Jul 23, 2007 1:47 pm
1535
just a couple of comments ... 1. About zero fill: lots of examples people send me use an explicit zero fill size, like "-size 1024" ... in the example below, ...
delaglio@...
Jul 23, 2007 2:48 pm
1536
Thanks,Delaglio, Thanks for your script. It sounds a good idea. But if I use your script to process the spectrum in both dimensions, do I still do HT transfom...
Yes, thats right ... here's an example ... note that since we want to divide by the direct dimension window function, we choose parameters to create a window...
delaglio@...
Jul 23, 2007 5:05 pm
1538
I'm trying to do some processing with a mulitprocessor machine. The jobs are properly divided up, and the fist section processes fine. Then the first node ...
Hello everybody, I'm stumped. Looking at my processed .ft2 file in nmrDraw, with no further adjustments (e.g. phase), I see (solid state) spectral features at...
Hi all ! I am starting to use NMRPipe to fit my relaxation data. I was surprised that the script 'model.com' (as from the tutorial) lost the assignment from my...
Sebastien Morin
sebastien.morin.1@...
Aug 14, 2007 3:55 pm
1542
Hej, Can anyone tell me how to import a correlation spectrum (in binary or ascii format) from matlab to NMRpipe? Many thanks Anders...
Anders Malmendal
anders@...
Aug 24, 2007 12:33 pm
1543
Dear All: I installed nmrpipe on new redhat linux system. I tried varian command (to convert varian data) and got follwing errors: Error in startup script:...
This is from the NMRPipe Installation Page ... ... INSTALLATION PROBLEMS There are a few common difficulties with installation of NMRPipe, and these generally...
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