Dear All: I installed nmrpipe on new redhat linux system. I tried varian command (to convert varian data) and got follwing errors: Error in startup script:...
This is from the NMRPipe Installation Page ... ... INSTALLATION PROBLEMS There are a few common difficulties with installation of NMRPipe, and these generally...
delaglio@...
Sep 6, 2007 7:28 pm
1545
Dear Frank: Thanks. I am still getting the same problem. I have /bin/tcsh as default cell and use RHEL4.0. If I need newer version of nmrPipe than please...
Hello Padmanava, RTFM means "read through frank's manual" I think the problem is with the environment variables TCL_LIBRARY TK_LIBRARY and BLT_LIBRARY. These...
delaglio@...
Sep 7, 2007 8:43 pm
1547
Dear Franks: Thanks. I am sorry that some of my questions are novice. Here all the lines in my .cshrc file that define the environment. ... setenv NMR_CONT...
Did you actually try to read the words that I typed?...
delaglio@...
Sep 7, 2007 10:20 pm
1549
Hi I am using the autoFit.tcl and modelExp.tcl scripts to fit my relaxation data to exponential decay curves. It works really well. I read the tutorial but I...
Sebastien Morin
sebastien.morin.1@...
Sep 9, 2007 11:34 pm
1550
Good questions, here are some comments ... In the analysis you are asking about, a 2D relaxation series in analyzed in two steps. Many of the parameters...
delaglio@...
Sep 10, 2007 5:58 pm
1551
Dear Colleagues, As our good friend Ryan McKay just reminded me, there is a potential challenge when downloading NMRPipe install files on a Mac: if you use's ...
delaglio@...
Sep 10, 2007 6:47 pm
1552
Hi users, I have acquired some simple 2D 15N hsqc data with Topspin 2.0 and when processed with the last version of NMRPipe I can't see my spectra with...
AHOY!! When you first view a spectrum in nmrDraw, the contour levels are set such that they span the the dynamic range of the data. So, if there are some...
delaglio@...
Sep 11, 2007 1:44 pm
1554
Try this script. Change some numbers to match yours. bruk2pipe -in ./ser \ -bad 0.0 -aswap -AMX -decim 2218.66666666667 -dspfvs 20 -grpdly 67.98625183105 47...
Hi Frank, Thanks alot for your help. Just I dont think it's the contour level at all (well actually I'm using NMRPipe for many years now, I have several NMR...
Hi users, Since these parameters, -xN and -xT, cost me a delay of about 2 days, then it's worth to let you know what F. Delaglio wrote to me: "As to -xN and...
Hello Frank, Ryan, et al- ... That's because Safari is honoring the MIME type presented by the web server. Since you're running Apache, you can edit the...
Okay, I got kind of curious about this, and there is a way to make things more friendly for Safari users. ... Instead of adding .Z as a gzip MIME type, add it...
Hi ! Thanks for the helpful comments. I have a few other questions, though. 1. The code (for example in modelExp.tcl) talks about extracting the amplitude of...
Sebastien Morin
sebastien.morin.1@...
Sep 13, 2007 9:09 pm
1560
... Since the model assumes that the linewidths for a peak are the same in each plane, the evolution of a peak's volume is proportional to the evolution of...
delaglio@...
Sep 14, 2007 2:27 am
1561
Hi, Thanks again for the useful comments. I tried different numbers of Monte Carlo simulations and, for the data I have, it seems that 51 simulations and more...
Sebastien Morin
sebastien.morin.1@...
Sep 17, 2007 3:05 pm
1562
Nice work, Sebastien, this is useful info for the rest of us. I expected that a reasonable number of trials would be somewhere between 10 and 100. As to the...
delaglio@...
Sep 18, 2007 2:52 pm
1563
Hi again Thanks for the comments ! I tried different seeding numbers for modelXY and it works fine, thanks. Here are some statistics on the number of...
Sebastien Morin
sebastien.morin.1@...
Sep 19, 2007 10:27 am
1564
Dear Colleagues, I acquired a 3D HCCCONH with 48 and 168 points for 15N and 13C dimensions. Somehow, there are two fids in 13C plan of 139 point distorted. I...
The details for replacing bad points are described in the LP manual page. If the bad data is limited to a few vectors in a single Z-Axis plane, then you can...
delaglio@...
Sep 24, 2007 4:47 pm
1566
Hello, I am trying to analyze some relaxation data we collected on a Bruker 800 Avance system. We collected the data as a series of 2D HSQCs with the varying...
At the bottom of the ft2.com script there should be some the following lines: series.com ft/*.ft2 ls ft/*.ft2 > series.list If you don't have those lines I...
Hi Andy, Did you define the processed data in ft/* as 3D? Like: sethdr ft/relax001.ft -ndim 3 -zN 10 -zT 10 sethdr ft/relax002.ft -ndim 3 -zN 10 -zT 10 etc for...
Virgil Simplaceanu
vs2a@...
Sep 27, 2007 8:58 pm
1569
Virgil, Thanks for your suggestion. That was the trick! We actually only took part of our data and changed the headers for 2 or 3 of the experiments. But...
Very glad problem was solved. You can put those sethdr commands into a textfile and make it executable (chmod a+x set_3d, for example). You may also add '-zLAB...
Virgil Simplaceanu
vs2a@...
Sep 28, 2007 7:07 pm
1571
Dear all, in the nmrpipe/com directory I have found a peCOSY.tcl that seems to be the script to create the 2D reference spectrum from the 1D spectrum mentioned...
sette@...
Oct 1, 2007 2:42 pm
1572
Hello nmrpipe-group, I would like to ask you the following. I am trying to process a HMBC (1H-13C) spectrum which was acquired in the direct dimension in DQD...
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