Dear nmrpipe group, When I process the experiment HMBC (pulse sequence "hmbcetgpl2nd"), acquired in Magnitud Mode. I get the expected spectrum but twice in...
Your -aq2D should be complex (States) in the conversion script. You could also try the FT -auto option in the indirect dimension. The rest should be okay. ...
Siddhartha Sarma
sidd@...
Apr 3, 2008 11:26 am
1709
Thank you Siddhartha for your quick answer. I have tried setting States in -aq2D and FT -auto in the indirect dimension but I keep getting the spectrum...
This can happen if you have the wrong number of D0 in your acquisition. The pulse programs contains 2 D0, is that what you have defined in the parameters? ...
Here's the usual way to convert and process Magnitude-mode spectra. -yN and -yT will generally be the same -yMODE Real -aq2D Magnitude During processing, use...
I have collected HNCACB and CBCACONH spectrum on varian 600 machine. the number of scan is set 32 for Nitrogen dimension and stoped before 31 scan is finished...
Perhaps this section from the NMRPipe Reference Page will help ... ... If a given dimension of a spectrum is reversed, then that dimension should be processed...
Is it possible that you may have different sweep widths between the two spectra? Cheers MIke ... -- Mike Osborne Iric-Institut de Recherche en Immunovirologie...
Good afternoon, Give the example HNCACB scripts in our NMRPipe processing library a shot. That and other examples in the library should make the gcbcaconnh...
Hi, I have acquired Noesy - C-hsqc spectrum on 900MHz Bruker spectrometer. The spectrum was acquired with the following pulse sequence: noesyhsqcetgp3d from...
I wonder whether the two experiments were done with the same array order of phases. The array parameter could be either 'phase2, phase' or 'phase, phase2',...
Yes, the ND0 was set to 2, and when I process the spectrum with xwinnmr or topspin it looks fine, thank you for your email, -Rosa --- El jue, 3/4/08, Scott E....
Dear All, Does any one know any other sources (rather than PDB) that has the structural information (structures or models)of protein/peptide? (I apologize if...
Dear users, Recently I have installed FEDORA version 8 on my Linux machine. When I tried to run "nmrDraw" I get this error message: nmrdraw: xcb_io.c:285:...
Yes, that is the way I´ve tried to convert and process the spectrum but I keep getting the "doubled" spectrum in the indirect dimension, Thanks, -Rosa --- El...
Hi all, I have got a trouble when I installed NMRPipe on Ubuntu 8.04. When I tested the installation 'which nmrPipe' and 'man nmrPipe' worked fine but 'nmrPipe...
Hi Rosa, Here's what I got to work for processing HMBC from our AvanceII; the pulse program was hmbcgplpndqf, so slightly different than yours. Note that both...
Hello, I am having the same confusion with my processing macro for my HNCACB. I need to swap the carbon dimension, and FT -alt and FT -neg haven't worked. Do...
Dear Pipers, I invite you to take a look at the (already quite old - 6 months, but still kicking) NMR website: nmrwiki.org. Please see if you like the idea. ...
Hello all, I am a brand new user of both nmrpipe and nmrview, and I'm trying to become familiar with the combination of the two, therefore it might be that my...
Serena Leone
sleone@...
Apr 25, 2008 7:06 pm
1729
Have you tried WITHOUT putting the "-x" and "-y" options at your last two lines? If you want to switch axes, do it in nmriew. Hope this helps. Simon Serena...
Huzzah!!! Ok, "pipe2xyz" can only re-organize 3D and 4D data, although Serena's suggested 2D usage below would make sense, perhaps I'll add it some day. That...
thanks!!! it's a miracle!! now I don't understand why it wasn't working when I was adding the TP in the processing and piping all in once, but I think I can...
Serena Leone
sleone@...
Apr 25, 2008 9:06 pm
1732
Hi, I am currently trying to use autoFit.tcl with lots of spectra (i.e. 76). I used it before with success, but I get the error : ...
Sébastien Morin
sebastien.morin.1@...
Apr 25, 2008 9:33 pm
1733
Hi, I am interested in using the NMRPipe-based titration analysis programs. It appears that I am missing some of they key tcl scripts though (pcaView.tcl,...
Ian, All three of the tcl script needed for analysis of titrations live in com/ directory in the NMRPipe install. Make sure you have the most up-to-date...
Greetings all, The titration scripts are commercial applications, they are not included in the usual NMRPipe distribution. Anyone interested in these can...
Greetings, all ... Yes, I think we had an earlier post about this too ... anyway, some lazy unimaginitive bastard hard-coded a 64 parameter limit per signal. ...
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