Hi NMRPipe users. I have come across a problem, when I transform CBCACONH or HNCACB spectra using command "Bruker" and read the parameters, the data points of...
1780
ssahoo@...
sangramasahoo
Sep 9, 2008 8:12 am
I will be out of the office starting 09/08/2008 and will not return until 09/10/2008. I will respond to your message when I return....
1781
bostjan.japelj@...
sebastian5_5
Sep 9, 2008 8:12 am
I will be out of the office starting 09/09/2008 and will not return until 09/22/2008. I will respond to your message when I return....
1782
Nicholas Fitzkee
nfitzkee@...
Sep 9, 2008 12:57 pm
Hi Syed, I'm not an expert in NMRPipe by any means, but I think I can help you with this one. The bruker x, y, z columns are used to tell pipe the order in ...
1783
nkjvcjs
Sep 17, 2008 11:14 am
I just upgraded from Ubuntu Feisty to Hardy, and now when I try to start nmrDraw I get: nmrdraw: ../../src/xcb_io.c:285: _XAllocID: Assertion `!(dpy->flags & ...
1784
acmiklos
Sep 17, 2008 6:09 pm
Hey everyone, I apologize if this gets posted twice, but I tried to send an email earlier and it didn't seem to take. I just recently had to reinstall Windows...
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Frank Delaglio
bigfdelaglio
Sep 17, 2008 7:31 pm
Get the latest version :)...
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Frank Delaglio
bigfdelaglio
Sep 17, 2008 7:32 pm
Unfortunately, the WinXP install procedure posted at the NIH is a little out of date. That being said ... Check to see that there is both "xterm" and...
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Tara Sprules
tarasprules
Sep 17, 2008 8:36 pm
I have a very similar bug... totally different system (Mac OS 10.5.4). For some strange reason the xterm that opens when I start X11 will not allow me to...
1788
michal.respondek
michal.respo...
Oct 2, 2008 5:35 pm
Dear All, I have a 3D double sensitivity enhanced hcch-tocsy acquired on Varian. So far I have been processing the spectra using: var2pipe -in ./fid -noaswap...
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DeRose, Eugene (NIH/N...
derose@...
Oct 2, 2008 8:08 pm
Have you tried selecting Rance-Kay for ÂyMODE and using the ranceZ.M macro, e.g., var2pipe -in ./fid -noaswap \ -xN 1024 -yN 160...
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michal.respondek
michal.respo...
Oct 2, 2008 9:58 pm
I have tried that one, it is exactly the one from the NANUC library. Still no improvement, but anyway Thank You Eugene for replying. ... macro, ... 128 \ ... ...
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Douglas Kojetin
envirodug
Oct 4, 2008 9:12 pm
Hi All, I get a segmentation fault when trying to use nmrWish under Mac OS 10.5.5 (using a freshly downloaded copy of NMRPipe): $ nmrWish Segmentation fault Is...
1792
feher_krisztina
Oct 4, 2008 9:13 pm
As I am not quite sure if my previous message has been sent I send it again. Sorry if it comes twice. ... Dear All, For an HSQC (Bruker) the bruker GUI...
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Yves Aubin
yves_aubin
Oct 5, 2008 4:07 pm
Dear Krisztina, Make sure you have the latest version of NMRPipe. I had this error when going to Topspin 2.0 while using an obsolete version. Problem went...
1794
susmita_b
Oct 5, 2008 6:26 pm
Hi, I would like to know whether anyone knows about a linux/mac programme/script which can convert .dat format file obtained from an omega spectrophotometer...
1795
rharris@...
Oct 5, 2008 9:48 pm
Dear Kristina I don't know if anyone else has replied before now, but the problem is that you do not have the latest version of nmrPipe, the version you have ...
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Ryan McKay
ryan_nanuc
Oct 6, 2008 5:45 pm
No problem on my machine. Which X11 are you using? I'm running XQuartz 2.3.1 xorg-server-1.4.2- apple 17 R On 4-Oct-08, at 12:22 PM, Douglas Kojetin wrote: Hi...
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Ryan McKay
ryan_nanuc
Oct 6, 2008 5:45 pm
Hi there, What is the seqfil you're using? e.g. ghcch_tocsy or ghcch_tocsyA? R On 2-Oct-08, at 3:57 PM, michal.respondek wrote: I have tried that one, it is...
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Douglas Kojetin
envirodug
Oct 6, 2008 6:39 pm
From X11.app > X11 > About X11 Xquartz 2.1.5 - (xorg-server 1.3.0-apple22) (2.1.5) How did you obtain the newer version? Thanks, Doug...
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Ben Eisenbraun
bpeisenbraun
Oct 6, 2008 7:05 pm
... http://xquartz.macosforge.org/trac/wiki -b -- Ben Eisenbraun Structural Biology Grid Harvard Medical School http://sbgrid.org...
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michal.respondek
michal.respo...
Oct 7, 2008 10:43 am
Hi, the seqfil we used is ghcch_tocsy. Though It would be interesting to see the processing scripts for both of the seqfil....
1801
Ryan McKay
ryan_nanuc
Oct 14, 2008 5:51 pm
Hi there, Take the 3D script from the NANUC NMRPipe script library and try this for the fid.com It was contributed by Tara Sprules (Eastern Canadian NMR...
1802
ysosuke
Oct 15, 2008 1:23 pm
Dear all, I'd like to know what is wrong with my fid.com script to process 4D 15N-15N NOESY spectrum. I got a strange spectrum after executing the fid.com...
1803
virus4126
Oct 16, 2008 11:24 am
Dear all: I recently collected a CCH-Tocsy and a (4D) 13C,15N-edited NOESY .For the CCH-Tocsy, I got the test%03d.fid(test011.fid-test060.fid) with the...
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ysosuke
Oct 16, 2008 9:16 pm
Dear Yu, Could you send or show me your fid.com script for 4D 13C,15N-edited NOESY, if you don't mind? I just posted an issue on the fid.com script for 4D...
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Frank Delaglio
bigfdelaglio
Oct 17, 2008 3:40 am
The manual page for LP has some notes about how to fix bad data. In the case of bad planes in a 3D, one approach is to transform the first two dimensions, then...
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Sébastien Morin
sebastien.morin.1@...
Oct 17, 2008 1:43 pm
Hi, Some tips can also be found in the last two sections (6.8 and 6.9) of the following page : ...
1807
dr_domincanchick
dr_domincanc...
Oct 17, 2008 7:07 pm
Hi everyone, Installation of NMRPipe should be simple, but I am having some issues. I downloaded all the necessary files (NMRPipe.tar), I am running a c- shell...
1808
nkjvcjs
Oct 30, 2008 10:56 pm
We took a series of 2D spectra for a t1 relaxation on a Bruker Avance 800. Each one has its own directory. I am trying to write a script that will open,...
