Hello all, I recently installed nmrPipe on a Mac running OS 10.5.5 and X11 (Xquartz 2.1.5 - (xorg-server 1.3.0-apple22) (2.1.5)), and everything seemed to go...
I'm trying to use nmrDraw on a remote machine, while displaying locally. Both machines run Scientific Linux. Opened spectra are displayed (only after 'draw')...
Check that the remote machine is set to 24-bit TrueColor; 16 or 32 bit might be a problem. Also, try a different window manager, at least as a test; sometimes...
... I've seen this when there is an invalid RgbPath specified in the xorg.conf. Xorg generally has safe defaults for settings like that, so I comment it out on...
Hi all, I am a new user of nmrDraw. I am trying to process my .fid using the basic 2D macro. Everything goes fine but I am seeing doublets (two peaks stacked...
Thanks! I have comments about the suggested scheme, though: 0. This scheme sends the FID data directly to a processing pipeline. This use is correct. However:...
Hello everyone, Thanks for your valuable suggestion. I have tried running the macro script with the corrections mentioned by Frank, but still I see a doublet...
Are the doublings in the 1H dimension or the indirectly detected dimension? If in the proton, sounds like your decoupling was off. If in the indirect dimension...
Dear all I am writing about an experimental issue that is partially related to NMRPipe but that can be more in general related to processing. I have recorded...
I would take out all the LP lines (at least for testing) and check if the carbon axis is reversed (use with "FT -neg")... ... to NMRPipe but that can be more...
Hello there, I'd like to transform 2D spectra acquired with randomly spaced data. There are two nmrPipe packages for the Generalized Fourier Transform ...
Peter, Using an FT based method will not give you the best result. The problem is that the PSF (which is simply calculated by setting all the points collected...
Maciejewski,Mark W.
markm@...
Dec 10, 2008 2:49 pm
1824
Hi all ! Interesting discussion. I've just few comments: 1. Our MFT software avaiable on the website processes 2D,3D and 4D data. However, the biggest gain is...
Greetings, All! Ok, NMRPipe actually has some of its own facilities for Non-Uniform Sampling (NUS) reconstruction, including a reasonable MEM implementation, ...
Hello there, Thanks for the guidance. I'm aware that generalized FT methods introduce artefacts, but I was worried that MEM methods might be prohibitively...
Starting data: HSQC 512 complex points x 128 complex increments. The MEM scheme below took 2 min 24 sec on my Dell laptop, vostro 1700 2.0GHz intel core duo...
Peter, My two cents. I can't speak for Pipe but the MaxEnt algorithm in RNMRTK is extremely fast, esp. on dual or quad cores. Â There is little practical...
Hi there, Thanks for the information - any processing time less than 5 minutes would be completely fine, so I definitely will try this out. Yum, humble pie... ...
Hi there A small basic question: When I process xz plan of 3d HNHA experiment, I see the diagonal of hn correlation but when process 3D (xyz) I see only the...
Hussan, Syed (NIH/NID...
hussans@...
Dec 22, 2008 10:32 pm
1831
Hi, in HNHA diagonal and cross peaks have opposite phase: may be you simply need to plot negative levels. Bye, Marco Happy holidays ... Dr.Marco Sette, Ph.D. ...
sette@...
Dec 23, 2008 11:43 am
1832
Ok, Lads and Lasses ... The first point in a time domain sequence is equal to the sum of points in the corresponding frequency domain. So, when you process...
Dear all: I run IPAP-HSQC for measure RDC on Varian machine. After processed data using below script. the inphase spectrum is ok,but there is some strong...
Hi there a few things you may have/could check .... 1) I'd not do POLY in the real dimension 'til after you have processed the indirect especially if you are...
Hi,James thanks for your suggestions. I tried to processing it but it still no improvement. confusing..... Best ________________________________ 寄件人﹕...
Try this macro. Use -cList 1 1 for inphase and -cList 1 -1 for antiphase.. ... #!/bin/sh nmrPipe -in 50-HN-IPAP-test.fid \ ... -out 50-HN-IPAP-test-AP.ft -verb...
Hi everyone! I recently switched to a Mac OSX and Im having trouble running a rearrange.com file for a TOCSY experiment. It runs fine on linux...anyone have...
Frank In your description about the chemical shift analysis you cite the paper from Johnson et. al, Biochemistry 1996, 35, 13895-13906. As far as I can tell,...
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