Dear all: I run IPAP-HSQC for measure RDC on Varian machine. After processed data using below script. the inphase spectrum is ok,but there is some strong...
Hi there a few things you may have/could check .... 1) I'd not do POLY in the real dimension 'til after you have processed the indirect especially if you are...
Hi,James thanks for your suggestions. I tried to processing it but it still no improvement. confusing..... Best ________________________________ 寄件人﹕...
Try this macro. Use -cList 1 1 for inphase and -cList 1 -1 for antiphase.. ... #!/bin/sh nmrPipe -in 50-HN-IPAP-test.fid \ ... -out 50-HN-IPAP-test-AP.ft -verb...
Hi everyone! I recently switched to a Mac OSX and Im having trouble running a rearrange.com file for a TOCSY experiment. It runs fine on linux...anyone have...
Frank In your description about the chemical shift analysis you cite the paper from Johnson et. al, Biochemistry 1996, 35, 13895-13906. As far as I can tell,...
Markus Voehler
m.voehler@...
Jan 23, 2009 3:27 pm
1840
Melissa, Can you please attach the script you are trying to run? And can you elaborate on trouble? Without seeing it, my initial guess is a byte swapping...
Hi Markus, I can't speak for Frank, but Ad encouraged to use the equation from Grzesiek, S. et al. (1996) Biochemistry 35:10256. Dav = sqrt( [(change in HN...
Nicholas Fitzkee
nfitzkee@...
Jan 23, 2009 4:16 pm
1842
Good morning, Whats a rearrange.com? Fid.com? On 23-Jan-09, at 6:31 AM, "dr_domincanchick"...
Nick Thanks for your response. This actually makes a lot of sense and the reference points exactly to Frank's procedure in NMRPipe. The factor of 0.2 squared...
Markus Voehler
m.voehler@...
Jan 23, 2009 8:31 pm
1844
hi Markus, One alternative way is to take the distributions from the BMRB for the H and N shifts and then weigh them according to the widths of these ...
Hi everyone! I recently switched to a Mac OSX and Im having trouble running a rearrange.com file for a TOCSY experiment. It runs fine on linux...anyone have...
Greetings all ... These are all good approaches to finding a suitable coefficient for combining HN and N chemical shifts. My intent was simply to weight the...
Well its a file that I used to simply change the axis on a TOCSY experiment that I processed. So instead of going through a H plane, I go through an amide...
Dear Colleagues and Fellow Pipers: As with last year, my web site (www.nmrscience.com) includes a list of events for the year where I?ll make presentations....
Hello Pipers: I want to combine a set of similar 2D spectra (data collected seperately, one parameter change) into one cube. I know it's possible, but whatever...
Huzzah!!! There is an example of this in "relax.tar.Z" at the NMRPipe download site (spin.niddk.nih.gov/NMRPipe/install) Things will work best if you create a...
Is there a way to apply first point scaling in the absence of a window function (the -c option)? I was making up a processing tutorial and wanted to put this...
Tara, You can always just apply a apodization function that is always one and include the -c 0.5 option at the end. For example: nmrPipe -fn EM -lb 0.0 -c 0.5...
Sure: MULT -c 0.5 -xn 1 I suppose you might also consider: EM -lb 0 -c 0.5 which has the advantange that it would record the first-point scaling value, and...
Hi All, I am trying to convert my nmr pipe data to nmr view format (.nv). I am using Mac osx 10.5.6 version. Earlier I have used sparky for the conversion...
You can convert to NMRView with the following type of script: #!/bin/csh/ xyz2pipe -in ./data/hncacb%03d.dat -verb \ ... Shaheen ... -- Shaheen Shojania c/o...
Thanks for the reply. But I have my input files with .ft extension (like .ft3 for HNCACB) rather than with .dat extension. Do I have to reprocess my data to...
No you do not have to change from ft to dat format. Just change the script to suit you file path and name. Shaheen ... -- Shaheen Shojania c/o Lawrence...
Hi I have installed NMRPipe (Linux version) in Root directory, and its working properly. But when it is executed from any user account rather than root, it ...
Most of the stuff below is covered in the install instructions ... We usually recommend against installing the software as root, to avoid permission issues and...
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