Dear Pipers, I wish to simulate 1D spectra using simTimeND. Frank's manual seems straightforward, and I thought I had the necessary params and commands, but...
Mark Foster
foster.281@...
Apr 3, 2009 7:05 pm
1891
Oh No! What have I done? Your usage more or less correct, assuming you have a peak table which includes INDEX X_AXIS XW and HEIGHT columns. ... BUT ... ...
Hello All- I'm wondering if anyone has run into conversion issues for standard Bruker 4D code/acquisitions. I ran a carbon-carbon 4D noesy in TS 2.1 PL3. I...
Greetings ... If conversion is performed via -yMODE Echo-AntiEcho then every pair of adjacent 1D vectors from the original data will be recombined to generate...
Hi, all, I have a gCOSY spectrum taken by Varian 500 MHz. I am following acme.tar instruction to extract the couplings. After extracting the spectrum from the...
Hey, isn't a Varian gCOSY experiment a magnitude-mode one, not phase-sensitive? If so, this surely won't work for either ACME or for diagonal suppression. As...
Hi all, I am a first year graduate student just getting my grips on NMRPipe. I have this H1-N15 HSQC RNA spectrum acquired using a Varian 700Mhz machine. It...
Try changing States-TPPI to echo-antiecho. Â In some cases you may need to reverse the indirect dimension in addition to that. Â Good luck, -David Rovnyak ... ...
As far as I have ever seen there are only two choices for the -yMODE (or -zMODE for 3D experiment) for data collected on Varian instruments- either Complex or...
Dear all, I've spent today some hours with a colleague (We are "novice" users) trying to understand why we are not able to use with our dataset the "-in"...
Hi Alex, I have used the addNMR macro to sum or substract two spectrum (not fid) and it worked well without any error. Before, I processed the fids with...
Hi, all, I have never done a dpfgse noesy and roesy before. I conducted the experiments, and obtained the spectra, but now I have problem analyzing them....
Alex, I'm guessing the two fids do not have the same dimensions. You can check this with the showhdr command. From my limited testing, I don't think the...
I am doing some saturation transfer difference spectra right now. I collect 2 or more fids, each corresponding to a saturation pulse at a different frequency....
In my own STD software, the little two-spectrum 2D FID is processed as-is, and the two channels are isolated with two uses of the function COADD. Then the...
I while determining the frequencies I would use to saturate, I did some experiments with 19 different frequencies, thus 19 fids in the experiment. I can...
Yes, COADD can be used for an arbitrary number of rows. In cases where there are many rows, its handy to use a script which will build appropriate coefficient...
Hi, How do I plot only the positive or negative plot of a 2D spectrum? And How do I scale the Positive and negative peaks? Can I scale them separately or can I...
To draw only positive contours, set the number of negative contours to zero. Corrrespondingly, to draw only negative contours, set the number of positive...
Hi frank and co we have recently started trying to use get capable with rosetta-cs and have been running the example script (runCSRjob.com gb3.tab) with gb3...
Greetings, All ... I sent this one to Shen Yang, who developed our part of the CS-ROSETTA distribution ... here is what he has to say: I checked the data for...
Hi, Frank, Thank you for the trick to show one specific contour. In terms of suppressing the diagonal peaks. What I do need to know? I obtained a DPFGSE...
Hello, I just finished recording pseudo3D experiments (t1/t2 and noe) using topspin and would like to process it. Do anyone know how to go forward for the...
Dear collegues, I have seen this kind of problem posted previously here but I couldnt find a solution that works for my dataset so far... so I'll risk a...
hi Johan, possibly inconsistent values for -zN and -zT? Please include your fid.com in your message, then it's earier to spot ... fr/ Dr. Frans A.A. Mulder ...
Frans is right. You have to manually change the indirectly detected dimension to reflect the failure point. Otherwise your fid.com file reads the varian...
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