Good morning, I think a better way would have been to ask "I would appreciate any help anyone could offer. Please and thank you.". There are an almost...
Hi Tahmina, Your problem has been kindly solved already. You just need to go to www.pdb.org and type in "ubiquitin". Then you get currently 642 files with the...
Hi, Frank, I tried all the combinations that you suggested for the magnitude data processing, and none of them worked. I checked the pulse sequence of the...
Sam, This is a phase sensitive experiment. Did you have the Hypercomplex 2D flag selected, i.e., phase=1,2, when you ran the experiment? Eugene DeRose, Ph.D. ...
DeRose, Eugene (NIH/N...
derose@...
Jun 9, 2009 2:58 pm
1946
Eugene, Thank you for replying me. Yes, I have the Hypercomplex 2D flag selected. Thanks, Sam...
We have a 3D C13HMQC-NOESY-HMQC. It has 140 planes. Unfortunately, during aquisition planes #109 and 110 are no good because of ADC overflow. Does anyone have...
Using the formula int[(N-1)/2] + 1 ... if only plane 109 and 110 of the 3D FID are bad, this corresponds to the real and imag parts of point 55 in the Z-axis...
Dear Pipers: I have some problem with the conversion txt2pipe.tcl from 1D simulate data to pipe. Can you help me? The content of txt file is below. (Input Text...
pipe2txt.tcl expects 4 space-separated values per row. the first 3 columns are point locations in the X-Axis, Y-Axis, and Z-Axis. The 4th and final value in...
I had some problems with my computer while in the middle of some data analysis with nmrpipe and had to reboot. Once I was back in, I get these errors when I...
Hi Alex, If you're sure that you have changed nothing else, and if the problem is 100% reproducible, then the first place I would check is your update logs. If...
Nicholas Fitzkee
nfitzkee@...
Jun 19, 2009 12:15 pm
1953
It might also be worth getting the latest NMRPipe and re-installing; the install procedure checks the available fonts and tries to accommodate ......
Thank you for your answer quickly! According to the suggestion you given me,I convert 1D simulate data with 2048 complex points to nmrpipe format. the simulate...
The first column should go from 1 to 4096. As to setting the header, sorry, my mistake ... to get proper parameters for complex data from the real-only result...
Hi, I have a question about running the fid.com script provided by relax.tar data set. In my regular fid.com for Bruker Avance spectrometer with XWINNMR, I...
Hi, All, I am using DYNAMO to determine an NMR structure. However, I am stuck at the NOE/ROE distance restraint. I have ROE and NOE assignments and intensities...
Hello, I heard that there was a new TALOS with additional structures. Sure enough on the webpage http://spin.niddk.nih.gov/NMRPipe/talos/, a flashing update...
You may have heard there was a new _version_ of TALOS, called TALOS+. Check out http://spin.niddk.nih.gov/bax/software/TALOS+/index.html. This new version of...
Greetings All, Yes, I was going to announce this once it was integrated into the general NMRPipe install, but as noted below, you can currently install a...
Hi, All, I am using DYNAMO to determine an NMR structure. However, I am stuck at the NOE/ROE distance restraint. I have ROE and NOE assignments and intensities...
Hi, I have a question about using the scripts to get T1 and T2 from HSQC experiments. I processed the fid from the first HSQC experiment. However, when I...
Hi Simon ... You'll have to be a little more specific. What data is it that you are trying to process (your own data, or some demo data) ... And, show us the...
Howdy Frank et al, I updated our installation of NMRPipe to the June 2009 release last week, and I'm seeing an odd issue on some of our machines. Using the...
Hi Ben, As you note, the particular version and configuration of X11 is an obvious potential source of differences in behavior from one system to the next. In...
Hi, In the relaxation analysis, if some of the peaks in the last few experiments shifted little bit, is there anyway to correct the intensities of those...
The "-series" mode of autoFit.tcl is a general-purpose tool for extracting evolution of peak intensity over a series of spectra. So, it is usually suitable...
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