Hi All, Happy New Year! I just installed nmrpipe/nmrdraw in my laptop running Red Hat 8.0 (Gnome), and I am experiencing some problems. In particular, I get ...
Pineda-Lucena, Antonio
Antonio.Pineda-Lucena...
Jan 3, 2003 11:13 am
330
... I think someone noted previously that it might help to "chgrp" the group setting of all the software files so that they are the same group as the users of...
Frank Delaglio
delaglio@...
Jan 3, 2003 4:15 pm
331
Hi, I have ordered a Dell linux box with Red Hat 8.0. I will be using NMRPIPE subsequently on linux platform. Do you think I should go for RH8.0 or 7.3? ...
Hi All, Frank: I changed the group of all the software files, but it didn't work... However, I followed the suggestion of Paco Blanco (Thanks Paco!), and I ...
Pineda-Lucena, Antonio
Antonio.Pineda-Lucena...
Jan 6, 2003 4:52 pm
333
Dear Pipers, I've been using the modelExp.tcl script to do relaxation curve analysis of previously fitted data (using autoFit.tcl). modelExp.tcl has been ...
... sometimes, changing a fitting script to use different initial values can help with convergence ......
Frank Delaglio
delaglio@...
Jan 18, 2003 6:50 pm
335
Hi, When doing a basic 2D transform of 15N HSQC data (acquired on Varian, pulse program gNhsqc), I get a mirror image in F1 with mirrored peaks of opposite...
I would have a look at the adquisition mode used. Antonio b0son wrote: Hi, When doing a basic 2D transform of 15N HSQC data (acquired on Varian, pulse program...
... in the case of HSQC processing, a mirror image in the 15N dimension might be due to converting the data as "-yMODE Complex" rather than "-yMODE Rance-Kay"...
Frank Delaglio
delaglio@...
Jan 21, 2003 2:10 pm
339
Anyone using NMRPipe on linux in a dual-CPU environment? Any tips/tricks that aren't covered in the nmrShell man page? I'm a bit of a linux newbie, so any...
I'm running nmrPipe on a dual-CPU machine with RedHat 8.0 and have no problems, and don't think there are any tips required beyond the norm. All I did to...
Greetings All, Is there a way to print peak labels from nmrDraw? (One web-site says no, but I'm hoping they're wrong.) Currently, I'm using snapshot, which is...
Norma Pawley
npawley@...
Jan 29, 2003 9:47 pm
342
Some scripts I've seen for processing tripres 3D experiments do linear prediction on 13C, then linear prediction of 15N.... others do it the other way around. ...
Greetings All, Does anyone know of an existing script to change nmrDraw test.tab files into .xpk files? I have had significantly greater success with...
Norma Pawley
npawley@...
Feb 3, 2003 8:45 pm
344
I would like to draw your attention to the offering of an NSF sponsored two- day BioNMR workshop to be held this spring on the campus of the University of...
Greetings all, The strong peak wiggles always exist in my processed 3D gnoesyChsqc, especially the direct-detected H1 dimension. I have tried window function...
Good morning, If you could send me a jpeg or tiff file of what you¹re seeing I¹d be better able to make suggestions. You could be experiencing anything from...
Hi all, When I try to use one nmrDraw peaklist obtained from one spectrum into another spectrum (i.e. both HSQC) I get some 'weird' results if both spectra are...
Greetings all, I'm interested in learning more about the function QMIX. - man QMIX produces "No manual entry found for QMIX" - a google search on nmrPipe and...
Norma Pawley
npawley@...
Feb 19, 2003 11:54 pm
349
Dear Dr.Pawley, I am not quite sure how to use QMIX. The following is from Dr. Frank Delaglio when I asked his help. Hopefully it helps. ... The QMIX function...
... QMIX The QMIX function takes a "matrix" of real or complex coefficients which define how N input vectors are combined to make M output vectors. Therefore,...
Frank Delaglio
delaglio@...
Feb 20, 2003 4:26 am
351
How crucial is LP order? I know that you should set it to roughly the number of signals you expect to extract, but can incorrect setting of the order be...
Dear Kasper, I am not an expert in LP, but have some experience processing data. A simpleminded approach to complicated algortihms: see what happens. Just try...
Frans Mulder
frans.mulder@...
Feb 21, 2003 10:34 am
353
Dear all, Using Varian ProteinPack I acquired a 3d hncacb , which was interrupted wrongly when it almost finished! This is really bad! To make things worse,...
Kind of off-topic, though the experiment in question will be processed in nmrPipe eventually if I run it :) Anyway, 13C-noesyhsqc, H2O or D2O? I ran one in...
Hi Guangyu, As far as I know Varian data is a long file of FIDs, subsequently stepping through planes in (ni,phase) and (ni2,phase2) if the parameter "array"...
Perhaps you can try wft2da('ni',1) and wft2da('ni2',1) with VNMR to find out how many fid's have been collected in each dimension. VNMR should tell you how...
Hi Hsin, I checked that with Dr George Gray at Varian. The parameter ' celem ' specifies how many fids collected, then I can easily figure out the value of...
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