Greetings All, Does anyone know of an existing script to change nmrDraw test.tab files into .xpk files? I have had significantly greater success with...
Norma Pawley
npawley@...
Feb 3, 2003 8:45 pm
344
I would like to draw your attention to the offering of an NSF sponsored two- day BioNMR workshop to be held this spring on the campus of the University of...
Greetings all, The strong peak wiggles always exist in my processed 3D gnoesyChsqc, especially the direct-detected H1 dimension. I have tried window function...
Good morning, If you could send me a jpeg or tiff file of what you¹re seeing I¹d be better able to make suggestions. You could be experiencing anything from...
Hi all, When I try to use one nmrDraw peaklist obtained from one spectrum into another spectrum (i.e. both HSQC) I get some 'weird' results if both spectra are...
Greetings all, I'm interested in learning more about the function QMIX. - man QMIX produces "No manual entry found for QMIX" - a google search on nmrPipe and...
Norma Pawley
npawley@...
Feb 19, 2003 11:54 pm
349
Dear Dr.Pawley, I am not quite sure how to use QMIX. The following is from Dr. Frank Delaglio when I asked his help. Hopefully it helps. ... The QMIX function...
... QMIX The QMIX function takes a "matrix" of real or complex coefficients which define how N input vectors are combined to make M output vectors. Therefore,...
Frank Delaglio
delaglio@...
Feb 20, 2003 4:26 am
351
How crucial is LP order? I know that you should set it to roughly the number of signals you expect to extract, but can incorrect setting of the order be...
Dear Kasper, I am not an expert in LP, but have some experience processing data. A simpleminded approach to complicated algortihms: see what happens. Just try...
Frans Mulder
frans.mulder@...
Feb 21, 2003 10:34 am
353
Dear all, Using Varian ProteinPack I acquired a 3d hncacb , which was interrupted wrongly when it almost finished! This is really bad! To make things worse,...
Kind of off-topic, though the experiment in question will be processed in nmrPipe eventually if I run it :) Anyway, 13C-noesyhsqc, H2O or D2O? I ran one in...
Hi Guangyu, As far as I know Varian data is a long file of FIDs, subsequently stepping through planes in (ni,phase) and (ni2,phase2) if the parameter "array"...
Perhaps you can try wft2da('ni',1) and wft2da('ni2',1) with VNMR to find out how many fid's have been collected in each dimension. VNMR should tell you how...
Hi Hsin, I checked that with Dr George Gray at Varian. The parameter ' celem ' specifies how many fids collected, then I can easily figure out the value of...
13C-separated NOESY-HSQCs can work very well in H2O, provided extreme care is taken in the design of the pulse sequence and the setup of the experiment, and...
Alex Breeze
breeze@...
Feb 27, 2003 10:39 am
360
Hi I have a series of 1D spectra that I would like to present as a stackplot. These spectra have been processed using NMRPipe. What is the best way to do this?...
Siddhartha Sarma
sidd@...
Mar 13, 2003 1:25 pm
361
Hi all, I am pretty new at this 3D stuff, so I hope I am not stating the obvious here. I have been trying to process HNCOCA data from a Bruker Avance using ...
Hi Rene, You could try using my suite of scripts "drx2pipe" which is downloadable from the BMRB website. They will create an NMRPipe conversion script for...
Duncan M Smith
duncan@...
Mar 13, 2003 5:26 pm
363
I recall hearing of a version of NMRPipe for Windows NT... anyone have experinece with this, and is it as good as 'nix versions? I'm currently using pipe in...
Hello all, I was wondering if someone could help with a problem I am encountering processing an hncacb dataset acquired on a DRX-600. Basically I have severe...
Sometimes, unexpected truncation in the final dimension is a sign that the experiment was not fully completed. This is especially so with Bruker data, since...
Frank Delaglio
delaglio@...
Mar 19, 2003 6:37 pm
366
Hi Mike, We finally got started with the acquisition of some 3D spectra on our new 500. Seeing your script made me wonder why you need such a big phase ...
Hi Rene, The large first order phase corrections are for shifting the water signal to the center of the spectrum (we used frequency shifting) becuase the SOL...
Hello Mike, don't you want to do the LP before SP in this section ... ... Take care, Sean -- ... Sean Cahill, Dept. of Biochemistry NMR Facility Albert...
Hi Everyone, I just wanted to update on this message. bAsically the yT and ZT commands were not half yN and zN. It seems (to me at keast) that this made little...
I installed succefully NMRPipe on Macos X.2.4 but I got that Xlib: extension "XFree86-Misc" missing on display ":0.0". X Error of failed request: 86 Major...
Laurent Ettouati
Laurent.Ettouati@...
Mar 27, 2003 4:32 pm
371
Hello Could anyone please tell me how to use NMR pipe to convert the data from Bruker to Varian software? Viji Vijayalekshmi Sarojini Dept of Chemistry ...
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