Hi I have a series of 1D spectra that I would like to present as a stackplot. These spectra have been processed using NMRPipe. What is the best way to do this?...
Siddhartha Sarma
sidd@...
Mar 13, 2003 1:25 pm
361
Hi all, I am pretty new at this 3D stuff, so I hope I am not stating the obvious here. I have been trying to process HNCOCA data from a Bruker Avance using ...
Hi Rene, You could try using my suite of scripts "drx2pipe" which is downloadable from the BMRB website. They will create an NMRPipe conversion script for...
Duncan M Smith
duncan@...
Mar 13, 2003 5:26 pm
363
I recall hearing of a version of NMRPipe for Windows NT... anyone have experinece with this, and is it as good as 'nix versions? I'm currently using pipe in...
Hello all, I was wondering if someone could help with a problem I am encountering processing an hncacb dataset acquired on a DRX-600. Basically I have severe...
Sometimes, unexpected truncation in the final dimension is a sign that the experiment was not fully completed. This is especially so with Bruker data, since...
Frank Delaglio
delaglio@...
Mar 19, 2003 6:37 pm
366
Hi Mike, We finally got started with the acquisition of some 3D spectra on our new 500. Seeing your script made me wonder why you need such a big phase ...
Hi Rene, The large first order phase corrections are for shifting the water signal to the center of the spectrum (we used frequency shifting) becuase the SOL...
Hello Mike, don't you want to do the LP before SP in this section ... ... Take care, Sean -- ... Sean Cahill, Dept. of Biochemistry NMR Facility Albert...
Hi Everyone, I just wanted to update on this message. bAsically the yT and ZT commands were not half yN and zN. It seems (to me at keast) that this made little...
I installed succefully NMRPipe on Macos X.2.4 but I got that Xlib: extension "XFree86-Misc" missing on display ":0.0". X Error of failed request: 86 Major...
Laurent Ettouati
Laurent.Ettouati@...
Mar 27, 2003 4:32 pm
371
Hello Could anyone please tell me how to use NMR pipe to convert the data from Bruker to Varian software? Viji Vijayalekshmi Sarojini Dept of Chemistry ...
Vijayalekshmi
vijays@...
Mar 27, 2003 7:37 pm
372
no...
Frank Delaglio
delaglio@...
Mar 27, 2003 7:38 pm
373
Frank Delaglio
delaglio@...
Mar 27, 2003 7:38 pm
374
Sounds like your X display isn¹t functional or isn¹t running in the background when you start nmrPipe. Make sure you¹ve downloaded, installed and have...
Viji, I assume that you have VNMR. Why not use VNMR to convert Bruker data to Varian readable format? There is a vnmr macro "convertbru" that might meet your...
Hello I am sure this is a trivial question, but I am not used to nmrPipe yet, and cannot seem to find this in the man pages. How do I get 1D projections from a...
Hi Jakob, You find some TCL scripts for projections on the executable path in the "com" directory: proj2D.tcl and proj3D.tcl Cheerful Regards, Frank proj2D.tcl...
Frank Delaglio
delaglio@...
Apr 3, 2003 3:03 pm
378
Dear Frank, Sometime back I had asked for some help in making stack pots of 1D spectra processed using NMRPipe. Do you have any suggestions? Siddhartha ... --...
Siddhartha Sarma
sidd@...
Apr 4, 2003 2:23 am
379
Hello everybody, I have some problems in processing noesyhsqc tocsyHsqc from Bruker DRX 800MHZ. Does anyone have nmrpipe script for processing these data. ...
Hi everyone, I use new Sun machine (Blade 2000, two processors) running Solaris 9 (64- bit system). I have installed precompiled version of Nmrpipe (sol). ...
Vaclav Veverka
vv12@...
Apr 10, 2003 3:41 pm
381
Hi, I am trying to use a macro to add and subtract two 2D slices in a pseudo 3D (3,2)GFT spectrum. The statement I try is (in a pipeline): nmrPipe -fn MAC...
Hi,
I made a mistake in my macro for the previous message. I should be
added and subtracting 2D slices (z), not 1D slices (y). But the question on= how to...
Greetings all ... A little more about the macro language can be found in the "MAC" man page. As Rene suggestion, NMRPipe macros which read and write their own...
Frank Delaglio
delaglio@...
Apr 14, 2003 5:38 pm
384
Hi,
I just ran into a error message when the bruker conversion program read the= parameters. The error occurred while parsing the hncogp3d.3 pulseprogram, w= ...
... most recent version of "bruker" seems to be able to handle the problematic construct that Rene was kind enough to illustrate ... cheerful regards, big fd ...
Frank Delaglio
delaglio@...
Apr 16, 2003 5:06 pm
386
In response to the recent comments about running nmrPipe on a Sun Blade 2000, I thought I would add our experience. When carrying out the identical simple 2D...
david
livex001@...
Apr 28, 2003 2:53 pm
387
Hello! Can anybody please send me the scripts for processing the N15-HSQC-IPAP in both ways aquired on Varian 600 Unity plus and Bruker Avance 500. Thanking in...
Thanks David ... Here's a comment though: a short 2D processing scheme may not be a good choice for a processing speed benchmark. A 3D case that takes a more...
Frank Delaglio
delaglio@...
Apr 28, 2003 7:19 pm
389
IPAP conversion and processing schemes can differ substantially based on: 1. Whether the data are gradient enhanced. 2. Whether the IP/AP loop is the innermost...
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