This message might appear if you try to run a TCL/TK script (such as "bruker" or "varian") with no X11 graphics environment. In particular, new Mac OS X users...
497
Martha Ann Schloot
marthafieldsy
Nov 3, 2003 3:03 pm
I have used nlinLS several times with success, but am now getting a strange output. I am reading in a .PCK from pipp and making a table. Often when doing...
498
Luminita Duma
l_duma
Nov 9, 2003 12:57 pm
Hello, I'm looking for an option in nmrpipe to save processed data into ascii format. Does anyone have an idea or a suggestion? Thanks, Luminita Duma ENS-Lyon ...
499
Josef Chmelik
xchmelik@...
Nov 10, 2003 11:51 am
Hello, look at the script: yourpipedir/com/pipe2txt.tcl Josef Chmelik...
500
Douglas Kojetin
envirodug
Nov 11, 2003 4:35 pm
Hi All- We are interested in reading in a text file (one column, with intensities) and 'converting' it to nmrpipe. I noticed txt2bin, txt2bin.tcl and bin2pipe...
501
Meredith Lambert
mnlamber
Nov 11, 2003 6:30 pm
Hi- I am also interested in saving my data in ASCII format. I looked at teh pipe2txt.tcl file, and I was wondering what I needed to modify in the script do ...
502
Siddhartha Sarma
sidd@...
Nov 12, 2003 11:53 am
Hi, We are in the process of acquiring a Bruker NMR machine. Bruker is now offering host computers that run either windows or Linux. I would like to know...
503
Josef Chmelik
xchmelik@...
Nov 12, 2003 11:53 am
Hi, I think that you don't have to modify the script, just simply type: pipe2txt.tcl yourfile.ft > yourfile.txt for 3D: pipe2txt.tcl ft/yourfile*.ft3 >...
504
jakobjlopez
Nov 12, 2003 12:40 pm
hi, is it possible to symmetrize a 2D spectrum with nmrPipe? (or nmrview or sparky, for that matter?) i looked in the docs, but didn't find anything pertaining...
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Meredith Lambert
mnlamber
Nov 12, 2003 2:28 pm
Josef- Thanks for the help! -Meredith :) ... -- Meredith Newby Lambert, Ph. D. Research Fellow Department of Chemistry, University of Michigan 930 N....
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Jim Kempf
jkempf0
Nov 12, 2003 3:59 pm
Since it's been of interest lately, I attach a couple of scripts I've written for extracting 1D slices from 2D nmrPipe data. pipe1Dx and pipe1Dy are simple...
507
Frank Delaglio
bigfdelaglio
Nov 12, 2003 5:37 pm
Greetings all ... There is a crude symmetrization macro "diag.M" that is suitable only for square datasets with the diagonal signal at the actual "diagonal"; of...
508
Jakob J. Lopez
jakobjlopez
Nov 12, 2003 5:46 pm
i consider it bad practice as well. but my boss wants a 'nice spectrum'. cheers! jakob...
509
Douglas Kojetin
envirodug
Nov 12, 2003 7:21 pm
Howdy All- I have more questions concerning the txt2bin/bin2pipe conversion process. I figured out how to convert a text file to bin using the txt2bin.tcl...
510
Meredith Lambert
mnlamber
Nov 13, 2003 5:49 pm
Hi everyone- I received the recent post that included scripts to transform a horizontal or vertical slice of a 2D experiment, but are there any scripts...
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Istvan Pelczer
ipelczer@...
Nov 13, 2003 6:00 pm
Dear Meredith, I am not sure if I understood well what you are asking about, but let me try to answer anyway. If you want to process one dimension only at a...
512
Frank Delaglio
bigfdelaglio
Nov 13, 2003 6:17 pm
Greetings Colleagues, The nmrDraw command "Proc/NMRPipe Command" will provide a one-line command window, where individual nmrPipe processing functions and ...
513
Meredith Lambert
mnlamber
Nov 13, 2003 6:23 pm
Thanks! That hgelps a lot! -Meredith :) ... -- Meredith Newby Lambert, Ph. D. Research Fellow Department of Chemistry, University of Michigan 930 N....
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Meredith Lambert
mnlamber
Nov 13, 2003 6:34 pm
Thanks for you help! -Meredith :) ... -- Meredith Newby Lambert, Ph. D. Research Fellow Department of Chemistry, University of Michigan 930 N. University, Ann...
515
Barbara Ciani
barbara_ciani
Nov 14, 2003 3:33 pm
Hi everyone. Can someone tell me if there is a way for NMRPipe to read/process bruker data that have been acquired with a 3-1-2 order (instead of 3-2-1)? I...
516
Ronald Shin, PhD
rshin21
Nov 14, 2003 8:55 pm
Barbara, This is a processing script for a Bruker DMX / DRX N15-NOESY-HSQC experiment (noesiif3gp). It's a similar situation, where F2 is N15, and F3/F1 are ...
517
Jim Kempf
jkempf0
Nov 18, 2003 3:51 pm
Hoping I can get a clarification on use of the QMIX function for separating interleaved NOE/no_NOE data. "Quick" background and my specific question follow. ...
518
Frank Delaglio
bigfdelaglio
Nov 20, 2003 5:25 pm
Many Greetings ... Here's some info on interleaved data that some might find interesting, including a note about the QMIX function ... Cheerful Regards, big fd...
519
dark_isnewcdt
Nov 28, 2003 1:00 pm
A question about fitting the window function to the indirect dimension size... I have an indirect dimension acquired with 120 increments (Echo/A-Echo), and the...
520
Frank Delaglio
bigfdelaglio
Nov 28, 2003 4:57 pm
Many Greetings, In this case, there are 128 complex points recorded on the disk, but only 120 of them are valid. It's for cases like these that we have...
521
dark_isnewcdt
Dec 1, 2003 9:34 pm
This has been asked before but I think it's worth asking again in case anyone has any new insight. For solvent suppression, example scripts on the web seem to...
522
Tara Sprules
tarasprules
Dec 1, 2003 9:34 pm
Hi, I have run a gHCCH_TOCSY, but cannot seem to process it using nmrview- no matter what combinations/permutations of complex and rance-kay I use I always end...
523
Hsin Wang
hzwang31
Dec 1, 2003 10:19 pm
Tara, The array parameter ('phase, phase2', or 'phase2', 'phase') determines aqORD (1 or 0, respectively). What is your "array"? Could this be a problem? It...
Thanks! This was the one that finally worked, once I added -aqORD 1. FYI: I recorded my expt on varian, using array phase,phase2 (with phase=1,2 and...
