When I use the showhdr program, I find a different OBS frequency is returned to that which I have provided in the original conversion script. Does anyone know:...
Greetings ... This is an unusual report, because once the observe frequencies in MHZ are recorded during conversion (via -xOBS -yOBS ...) they are generally...
En... seems Charlie's 1st question not unanswered and that's also the a question has been lingering in my mind for a long time. So far to my knowledge, vnmr,...
Charlie, I'm not sure about the two OBS numbers, but the value it should have is the absolute frequency of 0.0 ppm. Frank told me some time ago that this...
Duncan M Smith
duncan@...
Mar 5, 2004 11:16 pm
579
Hi, I would like to analyze some IPAP spectra with nlinLS, as I assume that should give me a better peak position than using the automatic peakpick functions...
Having used both Felix and nmrpipe, I have seen that Felix has several baseline correction/flattening options that aren't available in the core program of...
Many Greetings, Ok, good questions ... First, all note that there is a rather nice script "autoFit.tcl" which helps to automate the use of "nlinLS", everyone...
Hello, I have quite a number of datasets taken on a Bruker AM400 which I need to be able to process with nmrPipe. The files were all transferred from the...
Hi All, The mysterious and often not-too-bad "POLY -auto" is described in the appendix of the publication describing NMRPipe. The excerpt is below. There is...
Hello, I am trying to setup a 3D acquisition on spinsight with a varian infinity console and was wondering what was the best way to do this to facilitate...
Does TALOS rely on having all N,Ha,Ca,Cb and C shifts for a given residue to make a prediction? If I only have 4/5 or 3/5 of the necessary shifts and TALOS...
Hi everybody, I am processing a HCACO type experiment. In which when i processed xz plane(H,CA),the spectra more or less looks like a mirror image about the CA...
Hi everybody, I am processing a HCACO type experiment. In which when i processed xz plane(H,CA),the spectra more or less looks like a mirror image about the CA...
Hi All, The reliability of TALOS has not been studied when just a subset of the 5 usual shifts are used. Interested and ambitious users can take existing...
I've got examples for processing scripts in our NMRPipe Library. http://www.nanuc.ca/downloads/downloads.php Then click on NANUC_NMRPipe_Library. I think...
Check your quadrature mode in the conversion file (fid.com). Cheers Siddhartha ... -- Siddhartha P. Sarma Assistant Professor Molecular Biophysics Unit Indian...
Siddhartha Sarma
sidd@...
Mar 25, 2004 6:10 pm
591
Hi, there. I try to process a Avance Version 3D-15N-TOCSY spectrum with nmrpipe, the pulse program is : mleviietf3gp3d. The xy(HSQC) plane is OK, but the xz ...
Hi ju zhao, Please see the attached two script to convert and transform. They work on my pc at least. But there is a 180dgr phase difference on z dimension and...
Did you try -neg flag during FT of mirro-image looking plane? VG From: "zhaoju2k4" <zhaoju2k4@...> Reply-To: nmrpipe@yahoogroups.com To:...
Vitaliy Gorbatyuk
vitaliy_gor@...
Mar 30, 2004 9:49 pm
597
Well, this time it's me ... I used BioPack on Vnmr6.1C for a gNhsqcnoesyNhsqc experiments and acquired a 3D H-N-N spectra. But the xy or xz planes I processed...
Try y= states-tppi and z=rance/kay. it should work. cheers Siddhartha ... -- Siddhartha P. Sarma Assistant Professor Molecular Biophysics Unit Indian...
Siddhartha Sarma
sidd@...
Apr 1, 2004 11:24 am
599
It is a problem of nmrPipe. It seems nmrPipe can not transform properly an experiment collected with sensitivity enhanced mode in two dimesions, i.e....
Vitaliy Gorbatyuk
vitaliy_gor@...
Apr 1, 2004 10:12 pm
600
Hi All ... Yes, it's true that the conversion software can accept either "-yMODE Rance-Kay" or "-zMODE Rance-Kay" but not both together. Why? Because there is...
Yufeng, I think one of the problems you are having is that you ran your array as phase,phase2 rather than the more traditional phase2,phase. I also believe...
Mark Maciejewski
markm@...
Apr 2, 2004 3:02 pm
603
Hey Mark, good contribution, thanks. Now, about "folding" and phase distortion. here are some comments: Cheerful Regards, big fd 1. FT -alt: is not uncommon in...
Hi,all, I want to install the BSD lpr print spooling system into my SGI work station (IRIX 6.5). I found the ftp site (ftp.sgi.com), but it seems that I need...
Hi, After processing my 3D data with nmrPipe , I tried to analysis it with nmrView. I found that the chemical shift of the direct dimension in nmrView was...
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