Hi Matt. I hope these help. Sorry for taking so long to respond. I think the Millet paper will be most helpful. Mandel et. al. (1996) Biochemistry, 35:...
Hi Martha, Thank you for the references. They are definitely helpful. I also found another good paper. Palmer et. al. (2001) Methods in Enzymology, 339:...
Hi everybody! We're using RedHat Linux and are unsure whether to upgrade to the Enterprise or the Fedora version. If you use RedHat what are your views? Any...
Dear NMRPipe Group, For those of you who may be hacking around or thinking about installations on Xserves I've had a few days to learn some tips and tricks...
Hi, I'm having a problem on a Athlon/RH9 box with nmrDraw hanging up when I display a 1d trace from a 2d plane, process (em -lb 10) and then do a zf. At this...
Yes, I just recently saw the same problem. It started suddenly after working fine for about 4 weeks (we've only been used the RH9 version of NMRPipe that...
Hi David, Thanks for bringing this up; this a problem only noted recently, and it seems to happen more often on faster machines. The currently posted linux9...
... appreciated. I briefly gave Fedora a go, but went back to RH9. Visually, there's no difference between them. Under the hood, Fedora is a bit of a pain to...
Hi, I am just updating NMRPipe on my system. I am running RedHat9 however when I run binval.com and install.com the software asks for the the linux version...
Greetings All, We're planning to hire someone to develop comprehensive on-line documentation for NMRPipe. Anyone who might be interested in this position can...
Hello, I have the problem during processing 3D noesy_13Chsqc. I did not receive any errors, but the final spectrum has very poor quality. The same spectrum I...
Dear Izabela, Which type of 3D-13C-NOESY are you running? The conversion script (usually called fid.com) to nmrPipe may also be the culprit. First off I am...
Izabela, Unless your experiment is run starting at half-dwell in the indirect dimensions, you should scale the first point in the indirect dimension by 0.5,...
Eugene DeRose
derose@...
May 12, 2004 4:46 pm
639
Im trying to run nmrpipe on Mac OS X (10.3.3) and the nmrDraw program seems to work, but nmrWish, which a lot of other programs/commands depend on doesn't run....
Greetings All ... Sorry, the good folks at Apple decided that "LD_LIBRARY_PATH" wasn't good enough for them, their applications now use "DYLD_LIBRARY_PATH" to...
Hi Izabella, I subscribe to the other comments posted, but why do you extract LEFT? Then, I personally prefer the cosine squared window, sometimes slightly ...
Virgil Simplaceanu
vs2a@...
May 14, 2004 5:29 pm
642
Hi, everybody! I'm trying to install Pipe under (freshly installed) Red Hat Enterprise WS using the Linux9 version. However, once the nmrPipe test are being...
Hi Ruth, ... against glibc version 2.3. I think that RH Enterprise WS is based on glibc version 2.2, but you can check which version of glibc you have with...
Jonathan Lansing
lansing@...
May 19, 2004 8:34 pm
644
Hi All, I've recently acquired a 1D spectrm with VNMR which contains an arrayed parameter. When I convert the .fid, NMRpipe knows that there are two...
Hello All, I am having problems applying Linear Prediction to all indirect dimensions of my 4D data set. I can apply it easily to the individual projections...
Try it first without the back predictions. e.g. x lp y lp z lp a Then add back in the back predictions one at a time and see where/if it fails. However if it...
Geoff, You may also have a problem with the last step being -in -a -out -y without the inPlace because this arrangement might over-write itself. In addition...
If you skip the first HT does the second HT then cause poor results (i.e. is it always the first HT no matter where it is performed that is causing errors) or...
Hi, I am working on RDC so can anybody tell me how to process IPAP in NMRpipe and how the script should be written. --Ravi Pratap Barnwal TIFR,Mumbai Image by...
Does anyone know what has happened to the old nmrpipe manual at: http://lysine.pharm.utah.edu/nmrlab/nmrpipe.html ? My links which were working last week or...
Dear Ravi, ... -ov -out test.ft2 This script would add the IP and AP experiments, multiplying the AP by 1.1 to compensate for the loss of intensity. To obtain...
Dear Margit, http://www.nanuc.ca/downloads/scripts.php We've got the double sensitivity enhanced version of that sequence in our processing scripts library. ...
Well just an update, It seems that the first HT and LP actually work regardless of which dimension you perform it in, but they introduce so much noise into the...
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