Thanks, Dr. Delaglio! I know there is a lots of way to do the same thing. I have found nmrWish can do this job. I write the code like this: [chang@S102NMR2]#...
Hello again. This issue seems to have something to do with nmrPipe on Polaris and the handling of interleaved data. I do not know exactly why the Varian IPAP...
Dear all, I have experienced a strange problem processing a CBCANH spectrum after aquisition on a Bruker 600 MHz spectrometer (equipped with a TCI Cryoprobe). ...
Thanks for your comments! You can also find scripts com/proj3D.tcl and com/proj2D.tcl which are general purpose "automated" scripts for creating projections ...
Hi I would like to append 3 fids that were acquired at different times to make only one spectrum. The first one contains the first 38 points, the second...
Sebastien Morin
sebastien.morin.1@...
Jun 1, 2005 3:55 pm
960
Good question Sebastien! Two general ways to go about this. One is to combine the data before conversion, other is to combine the data after. In the case of...
Hi, everyone I am trying to process an HSQC-spectrum which has been recorded as two separate spectra, one echo and one antiecho, using the Bruker F1QF ...
Dear all, Some of you must be very good at working on Unix system, I hope you can help me on this: I got an error message: INIT: can not creat /var/adm/utmpx ...
Hi everyone, I have a question about converting an arrayed FID. Here is the experiment: 1D T1 inversion-recovery experiment with varying tau times. We have a ...
Hi Timur, Did you declare it as a 2D, which it really is, second dimension of type 'real ? Best regards, Virgil --On Friday, June 3, 2005 6:32 PM +0000...
Virgil Simplaceanu
vs2a@...
Jun 3, 2005 7:50 pm
965
Hi, Big F has given a good script for separating pseudo-3D data before: http://groups.yahoo.com/group/nmrpipe/message/43. I use that (slighly modified for my...
Kristofer Modig
kmo@...
Jun 5, 2005 9:15 pm
966
Hi, everybody! ... I've tried that but it doesn't seem to work with Rance-Kay enhanced data sets, e.g. Varian's BioPack relaxation experiments, even if I...
Hi Ruth, I have written a c-program that does the job with Varian data recorded in any (even stupid) way. I'm not at work today but I can send it tomorrow. BTW...
Patrik Lundström
patrik.lundstrom@...
Jun 6, 2005 2:36 pm
968
Hi, a typical script I use (with Rance-Kay) follows. It's used for a CPMG experiment and contains some garbage that automatically determines the CPMG strenght,...
Kristofer Modig
kmo@...
Jun 6, 2005 2:37 pm
969
Hi Ruth in the attachment I send a C-program that extract 2D fid from varian pseudo 3D. If run without arguments the program prints the following short help: ...
Vladislav Orekhov
orov@...
Jun 6, 2005 4:57 pm
970
Ok, here;s the TCL script again, which separates arrayed data, ... #!/bin/sh # The next line restarts using nmrWish \ exec nmrWish "$0" -- "$@" set auto_path...
Hi! Attached is another program that separates interleaved Varian data. It probably doesn't add much functionality to Vladislav's program but one additional...
Patrik Lundström
patrik.lundstrom@...
Jun 7, 2005 4:24 pm
972
Hi, hmm, yes it should be relaxT,phase. In principle, your order is "better" since it mixes the relaxation delays and t1 increments maximally, but instrumental...
Kristofer Modig
kmo@...
Jun 7, 2005 6:28 pm
973
Hi there I'm trying to run a script processing over many machines with nmrShell. The problem is our administrator is not keen to use rsh to login to remote...
Hi, there! I am very interested in the parameters meaning in the "procpar" file created by varian NMR software. When I use the nmrPipe command: var2pipe, most...
Tieying*, * I don't believe that the procpar can help you much here. These issues may arise from the way the pulseprogram is written. C13 axes upsidedown in...
Hi Tieying, You cannot tell from the "procpar" file whether you need to reverse a particular axis to display the spectrum according to conventions. This...
Patrik Lundström
patrik.lundstrom@...
Jun 10, 2005 12:37 pm
977
Mike, You can use ssh rather than rsh and probably should for security reasons. To use ssh use the -rsh argument as follows: nmrShell -rsh ssh -par pipe.net...
Mark Maciejewski
markm@...
Jun 10, 2005 3:35 pm
978
Thanks Mark That trick worked I had tried it before but did not specify the path! I also had to specify the full pathname by the way (using just "./" did not...
Great work all, many thanks ... One more thing about "nmrShell" ... it is VERY slow to print text messages produced by the scripts it executes on the various ...
Hi Frans, I am wondering what does it mean by chemical shifts evolves in the opposite direction, do you mean the dwell time starts from tmax and ends at 0? ...
Hi Patrik, I am wondering whether it is neccessary to add the -sw option for CS, i.e. nmrPipe -fn CS -rs 1 -sw to make referencing info consistent. Yufeng ... ...
Yufeng, Since I always use and write pulse-sequences that are upside up, I wouldn't know :-) If no one else wants to comment on this, I guess the easy way out...
Patrik Lundström
patrik.lundstrom@...
Jun 10, 2005 8:03 pm
983
Many thanks Patrik for clearifying. You are right that one does not need -sw in CS. It turns out the "CS -rs 1" compensates sw change caused by REV. So if I...
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