Hi all, I would say my "dream documentation" for nmrPipe would be: 1. Searchable 2. Have very complete definitions and examples for each command 3. Show...
69
Istvan Pelczer
ipelczer@...
Feb 8, 2000 3:39 pm
Dear Pipers, I join Patty both in welcoming the documentation and the list of requirements for an ideal solution. I'll be happy to contribute, too, with...
70
Siddhartha P. Sarma
sidd@...
Feb 8, 2000 7:03 pm
Hello Frank /other adept NMRPipe users I just noticed on the resonance designs webpage that a miscellaneous function called "INTEG" exists, which I assume will...
71
Jens Kaalby Thomsen
jkt@...
Feb 9, 2000 7:35 am
Hi I have tested nlinLS on various spectra and I now want to use it for a time series of spectra. (I would by the way like some more documentation on the use...
72
Istvan Pelczer
ipelczer@...
Feb 17, 2000 10:52 pm
Dear Frank, As far as further improvements of Pipe is concerned, have your given a thought to implementing processing, analysis and visualization of diffusion...
73
Xuemei Yuan
x.yuan@...
Feb 22, 2000 5:26 pm
Hello, I have just started using nmrPipe, and I have a problem processing 1D data recorded on a Bruker DRX500. Following is the little script that I used,...
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Duncan M Smith
duncan@...
Feb 22, 2000 5:38 pm
Hi Xuemei, You may need to change the -xMODE to DQD if this is the right mode. If this does not work, I have found that adding "-bad 20000000" helps....
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Virgil Simplaceanu
vs2a@...
Feb 22, 2000 6:10 pm
Excerpts from mail: 22-Feb-100 [nmrpipe] DRX500 1D data pr.. by Xuemei Yuan@... ... Bruk2pipe is OK, but it needs DECIM, DMX flag and dspfvs that you can ...
76
Jens Kaalby Thomsen
jkt@...
Feb 25, 2000 9:45 am
Hi I have a dataset where I only want to use the first half of the fid(s). How is this most easily done (2D data set)? I want to throw the last half away for...
77
Jens Kaalby Thomsen
jkt@...
Feb 25, 2000 11:57 am
Hi again ... I guess I can answaer this myself. Use the EXT command at the end of the conversion script. Jens Jens Kaalby Thomsen, Department of...
78
yunjun wang
yunjunwang@...
Mar 6, 2000 9:58 pm
Hello, I have problem in processing a 3d gnoesyNhsqc recorded in Varian 800 using NMRpipe (Linux version). The peaks in HN-H plane are symetrically folded...
79
spin@...
Mar 6, 2000 10:19 pm
Hello, ... I believe gnoesyNhsqc.c in Varian ProteinPack is a gradient sensitivity enhanced pulse sequence. You might want to try to uncomment the above line...
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Geoff Kelly
gkelly@...
Mar 7, 2000 1:41 pm
Hello all, Is there a straightforward way to calculate 2D projections of 3D data in nmrPipe? Cheers Geoff -- ...
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Frank Delaglio
delaglio@...
Mar 7, 2000 3:47 pm
Greetings from Canada, land of Adventure ... Below is an nmrWish TCL script which shows how to form projections for a 3D spectrum whose axes were names "HN"...
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yunjun wang
yunjunwang@...
Mar 7, 2000 5:58 pm
Hello Shou-Lin Chang, You are right, I modified the scripts as you suggested and now they work very well. Many thanks for your kind help ! Yunjun Wang Stanford...
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Xuemei Yuan
x.yuan@...
Mar 8, 2000 3:00 pm
Hello All, Many thanks for those who replied to my previous message! Here I have another question regarding baseline correction for a HSQC spectrum. I've tried...
84
David Live
livex001@...
Mar 8, 2000 3:50 pm
Xuemei: The cause of your baseline problem may be a bad point or bad FID in your data set that could be corrected with linear prediction. Alternatively you ...
85
Xuemei Yuan
x.yuan@...
Mar 10, 2000 2:30 pm
Hello all, I wish to process a pseudo-3D Bruker data (with 2 planes in the 3rd dimension) for the measurement of residual dipolar couplings using nmrPipe. By...
86
Kevin Gardner
kgardn@...
Mar 10, 2000 3:50 pm
... Here's a script that has worked well for me, based in large part on some prior discussions in this list for handling these issues with relaxation data. ...
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Keith G Inman
kinman@...
Apr 10, 2000 4:58 pm
Where can I find information describing macro language? I want to write a macro to interchange (swap) the 2nd and 3rd rows of each four-row group. (I have...
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Frank Delaglio
delaglio@...
Apr 11, 2000 12:34 am
Many Regards to all from Asilomar, Manual pages on the macro language can be found via "man MAC" However ... KI's question about interleaved data might be ...
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Keith G Inman
kinman@...
Apr 11, 2000 1:14 pm
Thank you, Frank! All day yesterday I tried one approach after another writing macros (I did finally fix a problem with my man path and found the pages you...
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Igor Filippov
igor.filippov@...
Apr 11, 2000 11:15 pm
Frank, Is it possible to use the QMIX function to process data which were collected using gradient sensitivity enhancement? Those data require "gradsorting"...
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Andy C. LiWang
andy-liwang@...
Apr 15, 2000 1:01 am
Hello All, Does anyone know how to have Mathematica (or C) output calculated time-domain data in the nmrPipe format? Thanks! Sincerely, Andy -- Andy C....
92
suzuki rintaro
aa77113@...
Apr 19, 2000 10:40 am
Hello. I need to check the bounding boxes for peak volumes and I have written a script which gets the X1|X3|Y1|Y3 from the peak table and draws boxes as...
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Frank Delaglio
delaglio@...
Apr 21, 2000 5:02 pm
To All, Many Greetings. As to the nmrWish command "drawBox": the "-x" and "-y" arguments expect that unlabled arguments are drawing coords in pixels. So, if we...
94
Gaohua.Liu@...
Apr 24, 2000 4:04 pm
Hi, I used Spsan and it only read the first plane, who knows any other way to do this? Thanks Gaohua...
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Mark P. Foster
foster.281@...
Apr 24, 2000 7:46 pm
Dear "Pipers", Has anyone out there written an xyz2pipe script that enables processed 2D and 3D felix data (.mat files) to be read into nmrPipe? (I have access...
96
Michael Massiah
massiah@...
Apr 25, 2000 10:18 pm
I am learning to use nmrpipe and am able to process 3d data. I can also convert the data to nmrview format and work with it there. however, i noticed that the...
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Frank Delaglio
delaglio@...
Apr 26, 2000 5:44 pm
Dearest Colleagues, Did you know that "RTFM" means "read through Frank's manual"? In any case: in order for nmrDraw to treat input spectra as 3D/4D for plane...
